View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_70 (Length: 416)
Name: NF11737A_low_70
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_70 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 7 - 411
Target Start/End: Complemental strand, 41357535 - 41357123
Alignment:
| Q |
7 |
aagcatagacacagaaaatgaatatgaaaggttagctcatgagctaaatcgccaatcccttcaaacaataataggttgtgaaaatatctaaagatctcta |
106 |
Q |
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| T |
41357535 |
aagcacagacacagaaaatgaatatgaaaggttagctcatgagctaaatcgccaatcccttcaaacaataataggttgtgaaaatatctaaagatctcta |
41357436 |
T |
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| Q |
107 |
tagcatagcatgatgcttcatatgtcattcat--------catacgatgttaaataagcacatagctagaatgtaaacaattgaacaacgcaaactaacc |
198 |
Q |
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| T |
41357435 |
tagcatagcatgatgcttcatatgtcattcattcattcatcatatgatgttaaataagcacatagctagaatgtaaacaattgaacaacgcaaactaacc |
41357336 |
T |
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| Q |
199 |
tctagaaatgtcaatgtggaacgaagagaattcacaaaaaacttagcctcggatagatccatgatcctgcgctcctgtaatcagataaacaagaatctcc |
298 |
Q |
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| T |
41357335 |
tctagaaatgtcaatgtggaacgaagagaattcacaaaaaacttagcctcggatagatccatgatcctgcgctcctgtaatcagataaacaagaatctcc |
41357236 |
T |
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| Q |
299 |
attagtttgaattaatattttcaatcacagatcacgaaaactagcagtaaattcaaactccactatgctataatgctataactccgctataccgctattt |
398 |
Q |
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| T |
41357235 |
attagtttgaattaatattttcaatcacagatcacgaaaactagcagtaaattcaaactccactatgctataatgctataactccgctataccgctattt |
41357136 |
T |
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| Q |
399 |
gacgccactttgt |
411 |
Q |
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| T |
41357135 |
gacgccactttgt |
41357123 |
T |
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