View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_74 (Length: 412)

Name: NF11737A_low_74
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_74
NF11737A_low_74
[»] chr3 (21 HSPs)
chr3 (1-227)||(9101182-9101408)
chr3 (1-226)||(9029068-9029294)
chr3 (1-227)||(8746908-8747134)
chr3 (5-227)||(9023404-9023626)
chr3 (1-227)||(9026108-9026334)
chr3 (1-227)||(9034574-9034800)
chr3 (1-176)||(9015428-9015602)
chr3 (33-163)||(9108812-9108942)
chr3 (39-184)||(8957118-8957263)
chr3 (49-185)||(8965272-8965408)
chr3 (49-179)||(8962563-8962693)
chr3 (3-179)||(9019290-9019466)
chr3 (39-181)||(8755581-8755723)
chr3 (43-170)||(9112118-9112245)
chr3 (49-186)||(8988340-8988477)
chr3 (324-370)||(9101045-9101091)
chr3 (367-406)||(9100959-9100998)
chr3 (330-369)||(9025981-9026020)
chr3 (330-369)||(9034446-9034485)
chr3 (330-369)||(9023277-9023316)
chr3 (324-368)||(8746795-8746839)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 9101408 - 9101182
Alignment:
Q  1 atgaaatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9101408 atgaaatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaac 9101309  T
Q  101 ttgtaacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccacggtggcggcgaagatgatgac 200  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9101308 ttgtaacagaaccagcagctccagcatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccacggtggcggcgaagatgatgac 9101209  T
Q  201 cataaagaaggggaagaacttcatagc 227  Q
    |||||||||||||||||||||||||||    
T  9101208 cataaagaaggggaagaacttcatagc 9101182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 9029294 - 9029068
Alignment:
Q  1 atgaaatccacaagaaaataagtgcaatc-atcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaa 99  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  9029294 atgaaatccacaagaaaataagtggaatccatcatgtttttagtgcttgaagatggcgagcattgacaacacaattgaaactccgatcatagccgctgaa 9029195  T
Q  100 cttgtaacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccacggtggcggcgaagatgatga 199  Q
    ||||||| ||||||||||||||||| |||||| |||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||    
T  9029194 cttgtaatagatccagcagctccagcatcaggacctggtgctggagccaacgaaggactaaggtcttgggcagaggccacggtggcggcgaagatgatga 9029095  T
Q  200 ccataaagaaggggaagaacttcatag 226  Q
    ||| |||||||| ||||||||||||||    
T  9029094 ccaaaaagaaggagaagaacttcatag 9029068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 8747134 - 8746908
Alignment:
Q  1 atgaaatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaac 100  Q
    ||||||||||||||||||| |||| ||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||     
T  8747134 atgaaatccacaagaaaatgagtggaatcatcatttttttagtgcttgaagatggcgagcattgacaacacaattgaaactccaatcatagccactgaat 8747035  T
Q  101 ttgtaacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccacggtggcggcgaagatgatgac 200  Q
    |||||||||||||| ||||||||  |||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||    
T  8747034 ttgtaacagatccaacagctccaacatcaggacctggtgctggagccaacgagggactgaggtcttgggcagaggccagggtggcggcgaagatgaagac 8746935  T
Q  201 cataaagaaggggaagaacttcatagc 227  Q
     | |||||||| |||||||||||||||    
T  8746934 gaaaaagaaggagaagaacttcatagc 8746908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 9023626 - 9023404
Alignment:
Q  5 aatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgt 104  Q
    ||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||  |||| ||||| ||||||||||||||||||    
T  9023626 aatccacaagaaaatgagtggaatcatcatgtttttagtgcttgaagatggcgagcattgacaatacaaccgaaattccgaccatagccactgaacttgt 9023527  T
Q  105 aacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccacggtggcggcgaagatgatgaccata 204  Q
    |||||||||||||||||||| |||||| |||||||| ||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||| |    
T  9023526 aacagatccagcagctccagcatcaggacctggtgccggagccaacgagggactaaggtcttgggcagaggccactgtggcggcgaagatgatgaccaaa 9023427  T
Q  205 aagaaggggaagaacttcatagc 227  Q
    ||||||| ||||||||| |||||    
T  9023426 aagaaggagaagaactttatagc 9023404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 9026334 - 9026108
Alignment:
Q  1 atgaaatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaac 100  Q
    |||||||||||||||||||||||| |||||| |||||||||||| || |||||||||| |||||||||||||| ||||||||||||||| ||||||||||    
T  9026334 atgaaatccacaagaaaataagtggaatcattatgtttttagtgtttgaagatggcgatcattgacaatacaactgaaactccgatcattgccactgaac 9026235  T
Q  101 ttgtaacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccacggtggcggcgaagatgatgac 200  Q
    ||||||||||||||||| |||||| |||||  |||||||||||||||||||| ||||| || | ||||||||||||||||||||||||||||||||||||    
T  9026234 ttgtaacagatccagcaactccagcatcagaacctggtgctggagccaacgaaggactaagatcttgggcagaggccacggtggcggcgaagatgatgac 9026135  T
Q  201 cataaagaaggggaagaacttcatagc 227  Q
    || |||||||| |||||||||||||||    
T  9026134 caaaaagaaggagaagaacttcatagc 9026108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 9034800 - 9034574
Alignment:
Q  1 atgaaatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaac 100  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  9034800 atgaagtccacaagaaaataagtgaaatcatcatgtttttagtgcttgaagatggcgagcattgacaacacaattgaaactccgatcatagccaccgaac 9034701  T
Q  101 ttgtaacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccacggtggcggcgaagatgatgac 200  Q
    ||| |||||||||||||||||||| |||||| |||||||| ||||||||||| ||||| |||| |||||||||||||||| |||| |||||||||  |||    
T  9034700 ttgcaacagatccagcagctccagcatcaggacctggtgccggagccaacgaaggactaaggtcttgggcagaggccacgatggcagcgaagatggcgac 9034601  T
Q  201 cataaagaaggggaagaacttcatagc 227  Q
     | |||||||| |||||| || |||||    
T  9034600 gaaaaagaaggagaagaattttatagc 9034574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 9015602 - 9015428
Alignment:
Q  1 atgaaatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaac 100  Q
    |||||||||||||||||||||||| |||||| || ||||||||| || ||||||||||||||||||||||||||||||||||| | ||||| |||||||     
T  9015602 atgaaatccacaagaaaataagtggaatcataat-tttttagtgtttgaagatggcgagcattgacaatacaattgaaactccaaccatagtcactgaat 9015504  T
Q  101 ttgtaacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggc 176  Q
    |||||||| ||||||| ||||| | |||||| |||||||| |||| ||||||||| ||||||| ||| || |||||    
T  9015503 ttgtaacatatccagctgctccggcatcaggacctggtgccggagacaacgaggggctgaggtcttgagccgaggc 9015428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 33 - 163
Target Start/End: Complemental strand, 9108942 - 9108812
Alignment:
Q  33 atgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagatccagcagctccaggatcaggg 132  Q
    ||||||||||| ||| ||||  || ||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||| ||||||||   ||||||     
T  9108942 atgtttttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaacttgtaacagatccggcagctccgacatcagga 9108843  T
Q  133 cctggtgctggagccaacgagggactgaggt 163  Q
    |||| |||||||||||| |||||||||||||    
T  9108842 cctgatgctggagccaatgagggactgaggt 9108812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 39 - 184
Target Start/End: Complemental strand, 8957263 - 8957118
Alignment:
Q  39 ttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagatccagcagctccaggatcagggcctggt 138  Q
    ||||| ||| || ||||||| ||||||||  ||||||||| |||||||||||||||| |||||||||||| |||| ||||||||||  ||||| || |||    
T  8957263 ttagttcttgaaaatggcgaccattgacagcacaattgaagctccgatcatagccacagaacttgtaacaaatccggcagctccagcgtcaggaccgggt 8957164  T
Q  139 gctggagccaacgagggactgaggttttgggcagaggccacggtgg 184  Q
    |||||||| ||||| ||||| |||| |||||| |||||||||||||    
T  8957163 gctggagctaacgacggactaaggtcttgggccgaggccacggtgg 8957118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 49 - 185
Target Start/End: Complemental strand, 8965408 - 8965272
Alignment:
Q  49 aagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagatccagcagctccaggatcagggcctggtgctggagcca 148  Q
    ||||| |||||||||||||  ||||||||| |||||||||| ||||  ||||||||||||||||| ||||||||||  ||||| | ||||||||||||||    
T  8965408 aagattgcgagcattgacagcacaattgaagctccgatcattgccatagaacttgtaacagatccggcagctccagcgtcaggacttggtgctggagcca 8965309  T
Q  149 acgagggactgaggttttgggcagaggccacggtggc 185  Q
    |||| ||||| |||| |||||| |||||||| |||||    
T  8965308 acgacggactaaggtcttgggccgaggccactgtggc 8965272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 49 - 179
Target Start/End: Complemental strand, 8962693 - 8962563
Alignment:
Q  49 aagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagatccagcagctccaggatcagggcctggtgctggagcca 148  Q
    ||||| ||||||||||| |  ||||||||| |||||||||||||||| |||| || ||||||||| ||| |||||| |||||| |||||||||||||| |    
T  8962693 aagatagcgagcattgaaagcacaattgaagctccgatcatagccacagaacctgcaacagatccggcaactccagcatcaggacctggtgctggagcta 8962594  T
Q  149 acgagggactgaggttttgggcagaggccac 179  Q
    |||||||||| |||| |||||| ||||||||    
T  8962593 acgagggactaaggtcttgggccgaggccac 8962563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 3 - 179
Target Start/End: Complemental strand, 9019466 - 9019290
Alignment:
Q  3 gaaatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaactt 102  Q
    ||||||||| ||||||| ||||   |||| ||||||| ||| ||| |||||||| ||||||||||| ||||||||| ||||||||||||| ||||||||     
T  9019466 gaaatccaccagaaaattagtgggttcatgatgttttcagttcttcaagatggcaagcattgacaacacaattgaagctccgatcatagcaactgaactc 9019367  T
Q  103 gtaacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccac 179  Q
    ||||||||||||  ||| |||  |||||| |||||||| |||||  | |||||||| |||| ||| || ||||||||    
T  9019366 gtaacagatccacaagccccaacatcaggacctggtgccggagcggatgagggactaaggtcttgagccgaggccac 9019290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 39 - 181
Target Start/End: Complemental strand, 8755723 - 8755581
Alignment:
Q  39 ttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagatccagcagctccaggatcagggcctggt 138  Q
    ||||| ||| |||||||||||||| ||||| | ||| ||| |||| |||||||| |||||| ||||||||||||||||||| || | ||||||  |||||    
T  8755723 ttagttcttgaagatggcgagcatagacaaaataatcgaagctccaatcatagcaactgaatttgtaacagatccagcagcaccggcatcaggatctggt 8755624  T
Q  139 gctggagccaacgagggactgaggttttgggcagaggccacgg 181  Q
    || |||||||||||||||||||||| ||| || || |||||||    
T  8755623 gccggagccaacgagggactgaggtcttgagccgaagccacgg 8755581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 43 - 170
Target Start/End: Complemental strand, 9112245 - 9112118
Alignment:
Q  43 tgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagatccagcagctccaggatcagggcctggtgctg 142  Q
    ||||||||||| || ||||||||||| |||||  || |||| ||||||||||||| | |||||| ||||||| ||||||| | ||||||  ||||||| |    
T  9112245 tgcttaaagatagcaagcattgacaacacaatcaaagctcccatcatagccactggatttgtaagagatccaacagctccggtatcaggtgctggtgccg 9112146  T
Q  143 gagccaacgagggactgaggttttgggc 170  Q
    ||||||||||||||||||||| ||||||    
T  9112145 gagccaacgagggactgaggtcttgggc 9112118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 49 - 186
Target Start/End: Complemental strand, 8988477 - 8988340
Alignment:
Q  49 aagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagatccagcagctccaggatcagggcctggtgctggagcca 148  Q
    ||||| ||||||||||||| ||| |||||| ||||||||||||||||  |||||||| |||| |  |||||||||   ||||| ||||||||||||| ||    
T  8988477 aagatagcgagcattgacagtacgattgaagctccgatcatagccacataacttgtagcagaactggcagctccaacgtcaggacctggtgctggagaca 8988378  T
Q  149 acgagggactgaggttttgggcagaggccacggtggcg 186  Q
    |||||||||| |||| |||||| ||||| |||| ||||    
T  8988377 acgagggactaaggtcttgggccgaggctacggcggcg 8988340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 324 - 370
Target Start/End: Complemental strand, 9101091 - 9101045
Alignment:
Q  324 gtgggagatatgagaattgagagggtgtgggagtatttataagggag 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  9101091 gtgggagatatgagaattgagagggtgtgggagtatttataagggag 9101045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 367 - 406
Target Start/End: Complemental strand, 9100998 - 9100959
Alignment:
Q  367 ggagcttgtgaaaatatattatgaatgatttggtcgttag 406  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9100998 ggagcttgtgaaaatatattatgaatgatttggtcgttag 9100959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 369
Target Start/End: Complemental strand, 9026020 - 9025981
Alignment:
Q  330 gatatgagaattgagagggtgtgggagtatttataaggga 369  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  9026020 gatatgagaattgagagggtgtgagagtatttataaggga 9025981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 369
Target Start/End: Complemental strand, 9034485 - 9034446
Alignment:
Q  330 gatatgagaattgagagggtgtgggagtatttataaggga 369  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  9034485 gatatgagaattgagagggtgtgagagtatttataaggga 9034446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 369
Target Start/End: Complemental strand, 9023316 - 9023277
Alignment:
Q  330 gatatgagaattgagagggtgtgggagtatttataaggga 369  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  9023316 gatatgagaattgagagggtgtgaaagtatttataaggga 9023277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 8746839 - 8746795
Alignment:
Q  324 gtgggagatatgagaattgagagggtgtgggagtatttataaggg 368  Q
    ||||| ||||||||||||||||| || ||| ||||||||||||||    
T  8746839 gtgggtgatatgagaattgagagagtttggaagtatttataaggg 8746795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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