View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_78 (Length: 408)
Name: NF11737A_low_78
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_78 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 38 - 406
Target Start/End: Original strand, 38593909 - 38594275
Alignment:
| Q |
38 |
ggacatcatcaactcctaccaaactttccaagaaaggaagtaacaaaagcaattctttatctgaaggatcatcaaaccaactctcaattggtattccatt |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38593909 |
ggacatcatcaactcctaccaaactttccaagaaaggaagtaacaaaagcaattctttatctgaaggatcatcaaaccaactctcaattggtattccatt |
38594008 |
T |
|
| Q |
138 |
gtccacttggaatccaaatgcctgggaacagagaaaaacaacagcagaaatcattaacatttaccattgcaatcatttttctttaaataaagccaaaata |
237 |
Q |
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| T |
38594009 |
gtccacttggaatccaaatgcctgggaacagagaaaaacaacagcagaaatcattaacatttatcattgcaatcatttttctttaaataaagccaaaata |
38594108 |
T |
|
| Q |
238 |
aaaaattgcacaagtcatagcctggnnnnnnnatgtgaacagatatctactacttacataaggaattctctgtttatcttgagaaacgaaagagaatcct |
337 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38594109 |
aaaaattgcacaagtcatagcctgg-ttttttatgtgaacagatatctactacttacataaggaattctctgtttatcttgagaaacg-aagagaatcct |
38594206 |
T |
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| Q |
338 |
aactccataaaactcacctaaattttatgccttttccatattaacacagttcaaatttaattctatcac |
406 |
Q |
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| T |
38594207 |
aactccataaaactcacctaaattttatgccttttccatattaacacagttcaactttaattctatcac |
38594275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 38 - 206
Target Start/End: Original strand, 38588386 - 38588554
Alignment:
| Q |
38 |
ggacatcatcaactcctaccaaactttccaagaaaggaagtaacaaaagcaattctttatctgaaggatcatcaaaccaactctcaattggtattccatt |
137 |
Q |
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| T |
38588386 |
ggacatcatcaactcctaccaaactctccaagaaaggaagtaataaaagcaattctttatccgaaggatcgccaaaccaactcttaattggtattccatt |
38588485 |
T |
|
| Q |
138 |
gtccacttggaatccaaatgcctgggaacagagaaaaacaacagcagaaatcattaacatttaccattg |
206 |
Q |
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| T |
38588486 |
gtccacttggaatccaaatgcctgggaacaaagaaaaataacagcataaagcattaacatttaccattg |
38588554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 38588575 - 38588615
Alignment:
| Q |
207 |
caatcatttttctttaaataaagccaaaataaaaaattgca |
247 |
Q |
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| T |
38588575 |
caatcatttttctttaaataaagccaaattgtaaaattgca |
38588615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 38 - 157
Target Start/End: Original strand, 20140307 - 20140426
Alignment:
| Q |
38 |
ggacatcatcaactcctaccaaactttccaagaaaggaagtaacaaaagcaattctttatctgaaggatcatcaaaccaactctcaattggtattccatt |
137 |
Q |
| |
|
|||||||||||||| |||| ||||| ||||||||||||| || ||||||||| |||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
20140307 |
ggacatcatcaacttctactaaactctccaagaaaggaatcaatgaaagcaatttattatctgaaggatctgcaaaccaagtctcaattggtattccatt |
20140406 |
T |
|
| Q |
138 |
gtccacttggaatccaaatg |
157 |
Q |
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||||||||||| ||||||| |
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| T |
20140407 |
ctccacttggaacccaaatg |
20140426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 15835801 - 15835909
Alignment:
| Q |
41 |
catcatcaactcctaccaaactttccaagaaaggaagtaacaaaagcaattctttatctgaaggatcatcaaaccaactctcaattggtattccattgtc |
140 |
Q |
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|||||||||||||||| ||||| | |||||||||||| || |||| |||||||| ||||||||||||| ||||||||||| |||| ||| | |||| || |
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| T |
15835801 |
catcatcaactcctacaaaactcttcaagaaaggaagcaataaaatcaattcttcatctgaaggatcagaaaaccaactcttaattagtaattcattctc |
15835900 |
T |
|
| Q |
141 |
cacttggaa |
149 |
Q |
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||||||||| |
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| T |
15835901 |
cacttggaa |
15835909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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