View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_8 (Length: 587)
Name: NF11737A_low_8
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 26 - 476
Target Start/End: Complemental strand, 10598116 - 10597666
Alignment:
| Q |
26 |
gtctcttcagatgtagccgtgtcttcatcgagcactctgactgggagttcttcaatgaatacctcgttttcagcatgtacttcactttgtacatttccag |
125 |
Q |
| |
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||||||| |||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10598116 |
gtctctttagatatagccgtctcttcatcgagcactccgactgggagttcttcaatgaatacctcgttttcagcatgtacttcactttgtacatttccag |
10598017 |
T |
|
| Q |
126 |
atgtattagtcccttcaaatgtagccgtgtcatcatcaagcactccgactggaagctccttcaatgcatgcatatcagaatctaacccttcacttgcaga |
225 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10598016 |
atgtattagtcccttcaaatgtagccgtgtcttcatcaagcactccaactggaagctccttcaatgcatgcatatcagaatctaacccttcacttgcaga |
10597917 |
T |
|
| Q |
226 |
attgtcactgatatcatcattgttagctcccacaggtgattctttcaaagcagtcgtatcaagtttatcaaccacaataggaatgtcactgacctctgat |
325 |
Q |
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|||||||||||||| ||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10597916 |
attgtcactgatattatcatcgttagctcccacaggtgagtctttcaaagcagtggtatcaagtttatcaaccacaataggaatgtcgatgacctctgac |
10597817 |
T |
|
| Q |
326 |
tttgatttgcattctgaatccgttttgtcagaaaaattacttgtggaatccaatgcatcagcagcaattacaggactataatcttcgttgattaatccat |
425 |
Q |
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|||||||||||||| |||||||||||||| || || ||||||||||||| ||||||||||||| ||||||||||| ||| || ||||||||||||| |
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| T |
10597816 |
tttgatttgcattccaaatccgttttgtcaacaagatcacttgtggaatccgatgcatcagcagccattacaggactgctatcctcattgattaatccat |
10597717 |
T |
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| Q |
426 |
ttggtagcattgtagtctttgctctctcacttgatgcagaatcaacatgcg |
476 |
Q |
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| T |
10597716 |
ttggtagcattgtggtctttgttctctcacttaatgcagaatcaacatgcg |
10597666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 442 - 569
Target Start/End: Complemental strand, 10597664 - 10597537
Alignment:
| Q |
442 |
ctttgctctctcacttgatgcagaatcaacatgcgaccgagattcacttccaccatcatcatccttcatacagaaatattccttgggacttccattacca |
541 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| || | |
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| T |
10597664 |
ctttgttctctcacttgatgcagaatcaacatgcgaccgagattcacttctaccatcatcatccttcatacagaactgttccttgggacttccatcacta |
10597565 |
T |
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| Q |
542 |
gtaccttcagatgaatctttttctgatg |
569 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
10597564 |
gtaccttcagatgaatctttttctgatg |
10597537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 10598216 - 10598132
Alignment:
| Q |
25 |
agtctcttcagatgtagccgtgtcttcatcgagcactctgactgggagttcttcaatgaatacctcgttttcagcatgtacttca |
109 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||| ||| | || ||||||||| |
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| T |
10598216 |
agtctcttcagatgtagctgtgtcttcatcgagcactccgactggaagttcttcaatgaatacctcatttccggcttgtacttca |
10598132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 180
Target Start/End: Complemental strand, 10598272 - 10598169
Alignment:
| Q |
68 |
gggagttcttcaatgaatacctcgttttcagcatgtacttcactttgtacatttccagatgtattagtcccttcaaatgtagccgtgtcatcatcaagca |
167 |
Q |
| |
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|||||||||| |||||||||||| ||| |||| ||||||||| ||| |||| ||||||||| ||||| ||||||| ||||| ||||| |||| |
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| T |
10598272 |
gggagttctttaatgaatacctcatttccagcttgtacttcatttt---------cagaggtattagtctcttcagatgtagctgtgtcttcatcgagca |
10598182 |
T |
|
| Q |
168 |
ctccgactggaag |
180 |
Q |
| |
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||||||||||||| |
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| T |
10598181 |
ctccgactggaag |
10598169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 25 - 344
Target Start/End: Complemental strand, 53388746 - 53388427
Alignment:
| Q |
25 |
agtctcttcagatgtagccgtgtcttcatcgagcactctgactgggagttcttcaatgaatacctcgttttcagcatgtacttcactttgtacatttcca |
124 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||| || || ||||||||||||||||||||||||||| || |||||||||| |||||||| || |
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| T |
53388746 |
agtctcttcagatgtagccttgtcttcatcgattactccaacgggaagttcttcaatgaatacctcgttttcatcacttacttcacttagtacattttca |
53388647 |
T |
|
| Q |
125 |
gatgtattagtcccttcaaatgtagccgtgtcatcatcaagcactccgactggaagctccttcaatgcatgcatatcagaatctaacccttcacttgcag |
224 |
Q |
| |
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|||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
53388646 |
gatgtattagtctcttcaaatgtagccgtgtattcatcgagcactccgactggaagctcctacaatgcatgcatatcagaatctaacccttcacttgaag |
53388547 |
T |
|
| Q |
225 |
aattgtcactgatatcatcattgttagctcccacaggtgattctttcaaagcagtcgtatcaagtttatcaaccacaataggaatgtcactgacctctga |
324 |
Q |
| |
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||| ||||| |||||||||||||| |||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
53388546 |
aatcatcactaatatcatcattgtttgctcccacgggtaattctttcaaagcagtcgtatcaaatttatcaaccacaataggaatgtcgctgacctctga |
53388447 |
T |
|
| Q |
325 |
ttttgatttgcattctgaat |
344 |
Q |
| |
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|||||||||||||||||||| |
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| T |
53388446 |
ttttgatttgcattctgaat |
53388427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 392 - 569
Target Start/End: Complemental strand, 53388425 - 53388248
Alignment:
| Q |
392 |
attacaggactataatcttcgttgattaatccatttggtagcattgtagtctttgctctctcacttgatgcagaatcaacatgcgaccgagattcacttc |
491 |
Q |
| |
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|||||||||||| |||| || ||||||||||||| |||||||||||||| ||||| |||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
53388425 |
attacaggactacaatcctcattgattaatccatctggtagcattgtaggctttgttctctcacttgacgtagaatcaacatgcgaccgagattcacttc |
53388326 |
T |
|
| Q |
492 |
caccatcatcatccttcatacagaaatattccttgggacttccattaccagtaccttcagatgaatctttttctgatg |
569 |
Q |
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|||| ||||||||||||||||| || | ||||||||||||||| | || | ||||||||||||||||||||||||||| |
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| T |
53388325 |
caccgtcatcatccttcatacataattgttccttgggacttccctcactaataccttcagatgaatctttttctgatg |
53388248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 53388845 - 53388761
Alignment:
| Q |
25 |
agtctcttcagatgtagccgtgtcttcatcgagcactctgactgggagttcttcaatgaatacctcgttttcagcatgtacttca |
109 |
Q |
| |
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||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||| | || ||||||||| |
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| T |
53388845 |
agtcttttcagatgtagttgtgtcttcatcgagcactccaactgggagttcttcaatgaatacctcatttccggcttgtacttca |
53388761 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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