View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_80 (Length: 408)
Name: NF11737A_low_80
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_80 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 20 - 408
Target Start/End: Complemental strand, 29013767 - 29013379
Alignment:
| Q |
20 |
gaaatatgcataatatcagctcgtggagtaagagcatcacattcactatggtaacgtcaatggtatgctattggttgggttgatccaaccaacaaataca |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29013767 |
gaaatatgcataatatcagctcgtggagtaagagcatcacattcactatggaaacgtcaatggtatgctattggttgggttgatccaaccaacaaataca |
29013668 |
T |
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| Q |
120 |
taaccaaagttgatgcttcaaccaacacaaaccctctttggagaacaaagttttccattcaagttgataactctgatccaaattttcatgatcttgcatt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29013667 |
taaccaaagttgatgcttcaaccaacacaaaccctctttggagaacaaagttttccattcaagttgataactctgatccaaattttcatgatcttgcatt |
29013568 |
T |
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| Q |
220 |
gaatgttgaagtttatagcagagacccttttttctttacagagaaacttcatggatcagctactgttcttctcaaagagtttcttgctaaagggttgctg |
319 |
Q |
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| T |
29013567 |
gaatgttgaagtttatagcagagacccttttttctttacagagaaacttcatggatcagctactgttcttctcaaagagtttcttgctaaagggttgctg |
29013468 |
T |
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| Q |
320 |
aatgatgagggtttaaggcaagggagtgaagaagttggaagctatcagttaaggaagaagaaatctggtaaaccaggtggatttgttga |
408 |
Q |
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| T |
29013467 |
aatgatgagggtttaaggcaagggagtgaagaagttggaagctatcagttaaggaagaagaaatctggtaaaccaagtggatttgttga |
29013379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 20 - 408
Target Start/End: Complemental strand, 29366455 - 29366067
Alignment:
| Q |
20 |
gaaatatgcataatatcagctcgtggagtaagagcatcacattcactatggtaacgtcaatggtatgctattggttgggttgatccaaccaacaaataca |
119 |
Q |
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||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29366455 |
gaaatatgcttaatatcagctcgaggagtaagagcatcacattcactatggaaacgtcaatggtatgctattggttgggttgatccaaccaacaaataca |
29366356 |
T |
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| Q |
120 |
taaccaaagttgatgcttcaaccaacacaaaccctctttggagaacaaagttttccattcaagttgataactctgatccaaattttcatgatcttgcatt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29366355 |
taaccaaagttgatgcttcaaccaacacaaaccctctttggagaacaaagttttccattcaagttgataactctgatccaaattttcatgatcttgcatt |
29366256 |
T |
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| Q |
220 |
gaatgttgaagtttatagcagagacccttttttctttacagagaaacttcatggatcagctactgttcttctcaaagagtttcttgctaaagggttgctg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29366255 |
gaatgttgaagtttatagcagagacccttttttctttacagagaaacttcatggatcagctactgttcttctcaaagagtttcttgctaaagggttgctg |
29366156 |
T |
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| Q |
320 |
aatgatgagggtttaaggcaagggagtgaagaagttggaagctatcagttaaggaagaagaaatctggtaaaccaggtggatttgttga |
408 |
Q |
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| T |
29366155 |
aatgatgagggtttaaggcaagggagtgaagaagttggaagctatcagttaaggaagaagaaatctggtaaaccaagtggatttgttga |
29366067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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