View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_83 (Length: 402)

Name: NF11737A_low_83
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_83
NF11737A_low_83
[»] chr2 (15 HSPs)
chr2 (7-258)||(36444869-36445119)
chr2 (281-402)||(34392127-34392247)
chr2 (276-388)||(10163501-10163613)
chr2 (305-402)||(7381697-7381794)
chr2 (281-393)||(23863849-23863958)
chr2 (290-402)||(14565908-14566019)
chr2 (311-402)||(21603964-21604055)
chr2 (303-402)||(37357988-37358087)
chr2 (276-338)||(3668050-3668112)
chr2 (279-364)||(41095830-41095914)
chr2 (299-357)||(4779635-4779692)
chr2 (281-400)||(4775641-4775760)
chr2 (289-356)||(25275676-25275741)
chr2 (340-402)||(3668320-3668382)
chr2 (345-402)||(37811096-37811153)
[»] chr5 (16 HSPs)
chr5 (276-402)||(38010654-38010780)
chr5 (276-402)||(13478085-13478211)
chr5 (276-402)||(29989967-29990093)
chr5 (276-402)||(13015386-13015512)
chr5 (276-402)||(13086758-13086884)
chr5 (276-402)||(13421050-13421176)
chr5 (280-363)||(37881185-37881268)
chr5 (289-402)||(33858592-33858704)
chr5 (281-402)||(1826264-1826384)
chr5 (289-398)||(11607588-11607696)
chr5 (305-402)||(19357330-19357427)
chr5 (301-402)||(9827793-9827894)
chr5 (289-402)||(39570097-39570209)
chr5 (276-387)||(10292893-10293002)
chr5 (281-391)||(33271630-33271739)
chr5 (289-352)||(42148201-42148263)
[»] chr3 (18 HSPs)
chr3 (276-402)||(47186180-47186306)
chr3 (276-400)||(31187110-31187234)
chr3 (276-402)||(42664678-42664804)
chr3 (276-398)||(34029331-34029453)
chr3 (294-402)||(50934505-50934613)
chr3 (281-402)||(33509685-33509805)
chr3 (289-402)||(44380259-44380371)
chr3 (285-402)||(47426355-47426471)
chr3 (281-394)||(37742738-37742850)
chr3 (282-355)||(6022998-6023071)
chr3 (299-399)||(35094554-35094655)
chr3 (354-400)||(21963073-21963119)
chr3 (339-402)||(32319468-32319531)
chr3 (311-402)||(39498744-39498835)
chr3 (341-402)||(10018671-10018732)
chr3 (289-364)||(17466316-17466390)
chr3 (341-402)||(10179868-10179929)
chr3 (345-402)||(53440551-53440608)
[»] chr4 (18 HSPs)
chr4 (276-402)||(52012783-52012909)
chr4 (276-398)||(9799403-9799525)
chr4 (276-402)||(47943163-47943290)
chr4 (281-398)||(21260803-21260919)
chr4 (281-402)||(33249420-33249540)
chr4 (281-398)||(12473713-12473829)
chr4 (281-398)||(12528122-12528238)
chr4 (314-384)||(46719953-46720023)
chr4 (281-402)||(22343342-22343462)
chr4 (289-402)||(35869625-35869737)
chr4 (290-401)||(51811920-51812030)
chr4 (313-402)||(52910126-52910215)
chr4 (310-402)||(49999662-49999754)
chr4 (330-402)||(55590487-55590559)
chr4 (321-400)||(34829168-34829247)
chr4 (276-322)||(46720200-46720247)
chr4 (348-402)||(49998487-49998541)
chr4 (283-341)||(33174581-33174636)
[»] chr1 (14 HSPs)
chr1 (276-402)||(8809680-8809806)
chr1 (276-398)||(35998261-35998383)
chr1 (281-402)||(29119370-29119490)
chr1 (281-402)||(32676141-32676261)
chr1 (281-402)||(2569042-2569161)
chr1 (276-400)||(35534413-35534533)
chr1 (346-402)||(18056134-18056190)
chr1 (314-402)||(25161314-25161402)
chr1 (289-394)||(8462141-8462245)
chr1 (310-402)||(6223056-6223148)
chr1 (315-370)||(3688917-3688972)
chr1 (367-402)||(16679829-16679864)
chr1 (325-402)||(7214500-7214577)
chr1 (354-402)||(46435571-46435619)
[»] chr6 (7 HSPs)
chr6 (276-402)||(34245572-34245698)
chr6 (276-402)||(11113561-11113682)
chr6 (281-402)||(1211890-1212010)
chr6 (299-402)||(5403940-5404042)
chr6 (286-402)||(32644888-32645002)
chr6 (345-387)||(31030112-31030154)
chr6 (342-402)||(11753172-11753232)
[»] chr8 (8 HSPs)
chr8 (276-402)||(1514808-1514934)
chr8 (289-400)||(18168392-18168503)
chr8 (289-400)||(18631949-18632060)
chr8 (281-402)||(41179609-41179729)
chr8 (281-402)||(24337876-24337996)
chr8 (281-399)||(4708353-4708470)
chr8 (289-402)||(11254082-11254193)
chr8 (276-402)||(32825876-32826001)
[»] scaffold0032 (1 HSPs)
scaffold0032 (293-402)||(34199-34306)
[»] chr7 (5 HSPs)
chr7 (289-402)||(35341541-35341653)
chr7 (286-402)||(48250159-48250274)
chr7 (281-402)||(48072394-48072512)
chr7 (289-343)||(32694624-32694677)
chr7 (314-402)||(31306951-31307040)
[»] scaffold0229 (1 HSPs)
scaffold0229 (281-402)||(13051-13172)
[»] scaffold0263 (1 HSPs)
scaffold0263 (305-370)||(23168-23233)
[»] scaffold0519 (1 HSPs)
scaffold0519 (289-402)||(11200-11311)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 36444869 - 36445119
Alignment:
Q  7 caatgagatggacatcagggctattagacaaaattcaagaactacaataaataaagataaaggtgtaaaacgaattataatagatgatactcttcatcat 106  Q
    |||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36444869 caatgagtgggagatcagggctattagacaaaattcaagaactacaataaataaagataaaggtgtaaaacgaattataatagatgatactcttcatcat 36444968  T
Q  107 ataaactagttccaatttgtccatataattaagtttggattgattcaagtgacatgcagactacctaccttgtttagagtcccgtaacgtgagtgnnnnn 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||         
T  36444969 ataaactagttccaatttgtccatataattaagtttggattgattcaagtgacatgcagactacctaccttgtttagagtcccgtaatgtgagtg-aaaa 36445067  T
Q  207 nntatagacgatgaattggtccactcgtgtctaaacaaggtccaatattgtg 258  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36445068 aatatagacgatgaattggtccactcgtgtctaaacaaggtccaatattgtg 36445119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 281 - 402
Target Start/End: Original strand, 34392127 - 34392247
Alignment:
Q  281 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 380  Q
    ||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||| ||||||| |||||||||||| ||||| ||||  |||||| |    
T  34392127 tgtgccatgtggcacaccctttaaaaaa-atatatcaaataaagcatttataaagtaagattggtaggtggcacactctaattggccaatggtatatacc 34392225  T
Q  381 attggtaccttaatggtacaca 402  Q
    |||||||||| |||||||||||    
T  34392226 attggtacctcaatggtacaca 34392247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 276 - 388
Target Start/End: Complemental strand, 10163613 - 10163501
Alignment:
Q  276 taaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattat 375  Q
    |||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||  |||||||||||| | |||||||||||| ||||    
T  10163613 taaggtatgccatgtagcacatactttaaaaaacatatatcaaataaattatttataaagtaatatcagtatgtggcacatttttattggtcaatgttat 10163514  T
Q  376 ataacattggtac 388  Q
    |||||||||||||    
T  10163513 ataacattggtac 10163501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 305 - 402
Target Start/End: Complemental strand, 7381794 - 7381697
Alignment:
Q  305 aaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacaca 402  Q
    |||| ||||||||||||||| |||||||||||||||||||||  ||||||||||| ||||| ||||| |||||| |||||||||||||||||||||||    
T  7381794 aaaaaatatatcaaataaagaatttataaagtaacattggtagatggcacactctaattggccaatagtatataccattggtaccttaatggtacaca 7381697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 281 - 393
Target Start/End: Original strand, 23863849 - 23863958
Alignment:
Q  281 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 380  Q
    ||||||||||||||||| |||||||||  ||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||  |||||  ||||| |    
T  23863849 tgtgccatgtggcacaccctttaaaaat-atatatcaaataaagcatttataaagtaacattggtaggtggcacactctaattgaccaata--atatacc 23863945  T
Q  381 attggtaccttaa 393  Q
    |||||||||||||    
T  23863946 attggtaccttaa 23863958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 290 - 402
Target Start/End: Original strand, 14565908 - 14566019
Alignment:
Q  290 tggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtacc 389  Q
    |||||||  ||||||||||| |||||||||| ||||| ||||||| ||| |||||||||| |||||||||  ||| |||||  |||||||||||||||||    
T  14565908 tggcacatcctttaaaaaac-tatatcaaatgaagtacttataaaataatattggtatgtagcacactctacttgatcaatgatatataacattggtacc 14566006  T
Q  390 ttaatggtacaca 402  Q
    ||| |||||||||    
T  14566007 ttagtggtacaca 14566019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 311 - 402
Target Start/End: Complemental strand, 21604055 - 21603964
Alignment:
Q  311 tatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacaca 402  Q
    |||||||||||||  ||||||||||||||||||||| |||  ||||| | ||||||||||  |||||| |||||||||||||||||||||||    
T  21604055 tatatcaaataaaacatttataaagtaacattggtaggtgatacactataattggtcaatggtatataccattggtaccttaatggtacaca 21603964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 303 - 402
Target Start/End: Original strand, 37357988 - 37358087
Alignment:
Q  303 aaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacaca 402  Q
    |||||| | |||| |||||||| |||||||||||||||||| || ||| |||||||| ||| ||||||  |||||| |||||||||||||||| ||||||    
T  37357988 aaaaaaaaaatattaaataaagcatttataaagtaacattgataggtgacacactctaattagtcaatggtatatatcattggtaccttaatgatacaca 37358087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 276 - 338
Target Start/End: Original strand, 3668050 - 3668112
Alignment:
Q  276 taaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaa 338  Q
    |||| ||||||||||||||| ||||||||||||||||||| |||||||| | |||||||||||    
T  3668050 taagatgtgccatgtggcactcactttaaaaaacatatataaaataaagcacttataaagtaa 3668112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 364
Target Start/End: Original strand, 41095830 - 41095914
Alignment:
Q  279 ggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattg 364  Q
    |||||||||||||||| ||  ||||||||| || |||||||||||| ||||||||||||||||||||| ||||  |||||| ||||    
T  41095830 ggtgtgccatgtggcataccttttaaaaaa-atctatcaaataaagcatttataaagtaacattggtaggtggtgcactctaattg 41095914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 4779692 - 4779635
Alignment:
Q  299 ctttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacact 357  Q
    |||||||||| |||||||||||||||||||||||||||||||||| || | ||||||||    
T  4779692 ctttaaaaaa-atatatcaaataaagtatttataaagtaacattgttaggcggcacact 4779635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 400
Target Start/End: Complemental strand, 4775760 - 4775641
Alignment:
Q  281 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtattta-taaagtaacattggtatgtggcacactcttattggtcaatattatataa 379  Q
    ||||||||||||||||  |||||||||| |||||| |||||||  | ||| |||||||| |||||||  ||  ||| ||| ||||| ||||| ||||||     
T  4775760 tgtgccatgtggcacatcctttaaaaaa-atatattaaataaaacaattaataaagtaagattggtagatgagacattctaattggccaataatatatat 4775662  T
Q  380 cattggtaccttaatggtaca 400  Q
    |||||||| ||||||||||||    
T  4775661 cattggtagcttaatggtaca 4775641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 356
Target Start/End: Original strand, 25275676 - 25275741
Alignment:
Q  289 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacac 356  Q
    ||||||||  ||||||||||  |||||||||||||||||||| |||||||||||| || |||||||||    
T  25275676 gtggcacatcctttaaaaaag-tatatcaaataaagtattta-aaagtaacattgataggtggcacac 25275741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 402
Target Start/End: Original strand, 3668320 - 3668382
Alignment:
Q  340 attggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacaca 402  Q
    |||| |||||| ||||||||||    ||||| |||||||||||||||||||||||| ||||||    
T  3668320 attgatatgtgacacactcttaccaatcaatgttatataacattggtaccttaatgatacaca 3668382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 402
Target Start/End: Complemental strand, 37811153 - 37811096
Alignment:
Q  345 tatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacaca 402  Q
    ||||||||||||| | ||||| |||| |||||||||||||||| |  |||||||||||    
T  37811153 tatgtggcacactttcattggccaatgttatataacattggtatcccaatggtacaca 37811096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 276 - 402
Target Start/End: Original strand, 38010654 - 38010780
Alignment:
Q  276 taaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattat 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  38010654 taaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggccaatgttat 38010753  T
Q  376 ataacattggtaccttaatggtacaca 402  Q
    |||||||||||||||||||||||||||    
T  38010754 ataacattggtaccttaatggtacaca 38010780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 276 - 402
Target Start/End: Original strand, 13478085 - 13478211
Alignment:
Q  276 taaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattat 375  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  13478085 taaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaatatttataaagtaacaatggtatgtggcacactcttattggtcaatgttat 13478184  T
Q  376 ataacattggtaccttaatggtacaca 402  Q
    ||||||||||| |||||||||||||||    
T  13478185 ataacattggttccttaatggtacaca 13478211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 276 - 402
Target Start/End: Complemental strand, 29990093 - 29989967
Alignment:
Q  276 taaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattat 375  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29990093 taaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaacatttataaagtaacattggtatgtggcacactcttattggtcaatgttat 29989994  T
Q  376 ataacattggtaccttaatggtacaca 402  Q
    ||||||||| |||||||||||||||||    
T  29989993 ataacattgataccttaatggtacaca 29989967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 276 - 402
Target Start/End: Complemental strand, 13015512 - 13015386
Alignment:
Q  276 taaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattat 375  Q
    |||| |||| ||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13015512 taagatgtgacatgtggcacatactttaaaaaatatatatcaaataaaatatttataaagtaacattggtatgtggcacactcttattggtcaatgttat 13015413  T
Q  376 ataacattggtaccttaatggtacaca 402  Q
    |||||||||||||||||||||||||||    
T  13015412 ataacattggtaccttaatggtacaca 13015386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 276 - 402
Target Start/End: Complemental strand, 13086884 - 13086758
Alignment:
Q  276 taaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattat 375  Q
    ||||||||| ||||||||||||||||||||||| | |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  13086884 taaggtgtgacatgtggcacacactttaaaaaatacatatcaaataaaatatttataaaataacattggtatgtggcacactcttattggtcaatgttat 13086785  T
Q  376 ataacattggtaccttaatggtacaca 402  Q
    |||||||||||||||||||||||||||    
T  13086784 ataacattggtaccttaatggtacaca 13086758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 276 - 402
Target Start/End: Original strand, 13421050 - 13421176
Alignment:
Q  276 taaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattat 375  Q
    ||||||||| ||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||| ||| ||  |||||||||||| ||||| ||||    
T  13421050 taaggtgtgtcatgtggcatacactttaaaaaacatatattaaataaagcatttataaagtaacattgatatttgatacactcttattgatcaatgttat 13421149  T
Q  376 ataacattggtaccttaatggtacaca 402  Q
    ||||||||| |||||||||||||||||    
T  13421150 ataacattgataccttaatggtacaca 13421176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 280 - 363
Target Start/End: Complemental strand, 37881268 - 37881185
Alignment:
Q  280 gtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttatt 363  Q
    |||| |||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37881268 gtgtaccatgtggcacacattttgaaaaacatatatcaaataaaatatttataaagtaacattggtatgtggcacactcttatt 37881185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 289 - 402
Target Start/End: Original strand, 33858592 - 33858704
Alignment:
Q  289 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 388  Q
    ||||||||| ||||||||||  |||||||||||||  ||||||||||||||||||||| |||||||||| | ||||||||||  ||||||  ||||||||    
T  33858592 gtggcacaccctttaaaaaag-tatatcaaataaaacatttataaagtaacattggtaggtggcacactataattggtcaatgatatatactattggtac 33858690  T
Q  389 cttaatggtacaca 402  Q
    ||||||||||||||    
T  33858691 cttaatggtacaca 33858704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 281 - 402
Target Start/End: Complemental strand, 1826384 - 1826264
Alignment:
Q  281 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 380  Q
    |||||||||||||||| ||||||||||| ||||||||||||||| || || ||||||| ||||||| ||| |||||||| ||||  ||||  |||||| |    
T  1826384 tgtgccatgtggcacatactttaaaaaa-atatatcaaataaagcatctacaaagtaatattggtaggtgacacactctaattgaccaatggtatatacc 1826286  T
Q  381 attggtaccttaatggtacaca 402  Q
    |||||||| |||||||||||||    
T  1826285 attggtactttaatggtacaca 1826264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 289 - 398
Target Start/End: Original strand, 11607588 - 11607696
Alignment:
Q  289 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 388  Q
    ||||||||| ||||||||||  |||||||||||||  ||||||||||||| ||||||| |||||||||| | ||||||||||  |||||| |||||||||    
T  11607588 gtggcacaccctttaaaaaag-tatatcaaataaaacatttataaagtaatattggtaggtggcacactataattggtcaatggtatataccattggtac 11607686  T
Q  389 cttaatggta 398  Q
    ||||||||||    
T  11607687 cttaatggta 11607696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 305 - 402
Target Start/End: Original strand, 19357330 - 19357427
Alignment:
Q  305 aaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacaca 402  Q
    |||| ||||||||||||||| ||||||||||||| ||||||| |||||||||||| ||||| ||||  |||||| |||||||||| ||||||||||||    
T  19357330 aaaaaatatatcaaataaagcatttataaagtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccctaatggtacaca 19357427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 301 - 402
Target Start/End: Complemental strand, 9827894 - 9827793
Alignment:
Q  301 ttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtaca 400  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||| |||| ||||||| ||||   ||   |||||| |||||||||||||||||||||    
T  9827894 ttaaaaaagatatatcaaataaaatatttataaagtaatattggtaggtggtacactctaattgactaaaggtatataccattggtaccttaatggtaca 9827795  T
Q  401 ca 402  Q
    ||    
T  9827794 ca 9827793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 289 - 402
Target Start/End: Original strand, 39570097 - 39570209
Alignment:
Q  289 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 388  Q
    ||||||||| ||||||||||  |||||||||||||  ||||||||||||||||||||| ||| |||||||| ||||| ||||  |||||| ||||| |||    
T  39570097 gtggcacaccctttaaaaaag-tatatcaaataaaacatttataaagtaacattggtaggtgacacactctaattggccaatggtatataccattgatac 39570195  T
Q  389 cttaatggtacaca 402  Q
     |||||| ||||||    
T  39570196 tttaatgatacaca 39570209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 276 - 387
Target Start/End: Complemental strand, 10293002 - 10292893
Alignment:
Q  276 taaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattat 375  Q
    |||||||||||| ||||||||| |||||||||| ||||  ||||||||  | ||| ||| ||||||| ||| |||||||| ||||||||| |||| ||||    
T  10293002 taaggtgtgccacgtggcacaccctttaaaaaaaatat--caaataaaacacttacaaaataacattagtacgtggcacattcttattggccaatgttat 10292905  T
Q  376 ataacattggta 387  Q
    ||||||||||||    
T  10292904 ataacattggta 10292893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 281 - 391
Target Start/End: Complemental strand, 33271739 - 33271630
Alignment:
Q  281 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 380  Q
    ||||||| ||||| ||  |||||||||| ||||||||||||||| |||||| ||||||||||| ||  || |||||||| ||||| ||||  |||||| |    
T  33271739 tgtgccacgtggcgcatcctttaaaaaa-atatatcaaataaagcatttatcaagtaacattgatagatgacacactctaattggccaatgatatatatc 33271641  T
Q  381 attggtacctt 391  Q
    |||||||||||    
T  33271640 attggtacctt 33271630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 352
Target Start/End: Complemental strand, 42148263 - 42148201
Alignment:
Q  289 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggc 352  Q
    |||| |||| |||||||||| ||||||||||||||  ||||||||||||||||||||| |||||    
T  42148263 gtggtacaccctttaaaaaa-atatatcaaataaaacatttataaagtaacattggtaggtggc 42148201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 276 - 402
Target Start/End: Complemental strand, 47186306 - 47186180
Alignment:
Q  276 taaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattat 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  47186306 taaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggccaatgttat 47186207  T
Q  376 ataacattggtaccttaatggtacaca 402  Q
    |||||||||||||||||||||||||||    
T  47186206 ataacattggtaccttaatggtacaca 47186180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 276 - 400
Target Start/End: Original strand, 31187110 - 31187234
Alignment:
Q  276 taaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattat 375  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31187110 taaggtgtgacatgtggcacacactttaaaaaatatatatcaaataaaacatttataaagtaacattggtatgtggcacactcttattggtcaatgttat 31187209  T
Q  376 ataacattggtaccttaatggtaca 400  Q
    |||||||||||||||||||||||||    
T  31187210 ataacattggtaccttaatggtaca 31187234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 276 - 402
Target Start/End: Complemental strand, 42664804 - 42664678
Alignment:
Q  276 taaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattat 375  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  42664804 taaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaacatttataaaataacattggtatgtggcacactcttattggtcaatgttat 42664705  T
Q  376 ataacattggtaccttaatggtacaca 402  Q
    ||||| |||||||||||||||||||||    
T  42664704 ataactttggtaccttaatggtacaca 42664678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 276 - 398
Target Start/End: Original strand, 34029331 - 34029453
Alignment:
Q  276 taaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattat 375  Q
    |||||||||  ||||| |||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||| ||||| ||||    
T  34029331 taaggtgtgatatgtgacacacactttaaaaaacatatatcaaataaaacatttataaagtaacattagtatgtggcacactcttattgatcaatgttat 34029430  T
Q  376 ataacattggtaccttaatggta 398  Q
    |||||||||||||||||||||||    
T  34029431 ataacattggtaccttaatggta 34029453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 294 - 402
Target Start/End: Complemental strand, 50934613 - 50934505
Alignment:
Q  294 acacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaa 393  Q
    |||| ||||||| || ||||||||||||| | ||||||||||||||||||||| |||||||||||| ||||| ||||  |||||| ||||||||||||||    
T  50934613 acaccctttaaataaaatatatcaaataatgcatttataaagtaacattggtaagtggcacactctaattggccaatggtatataccattggtaccttaa 50934514  T
Q  394 tggtacaca 402  Q
    |||||||||    
T  50934513 tggtacaca 50934505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 281 - 402
Target Start/End: Complemental strand, 33509805 - 33509685
Alignment:
Q  281 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 380  Q
    ||||||||||||||||  |||||||||| ||| ||||||||||| || |||||||||| ||||||| |||||||||||| ||||||||||  ||||||      
T  33509805 tgtgccatgtggcacatcctttaaaaaa-atacatcaaataaagcatctataaagtaatattggtaggtggcacactctaattggtcaatgatatatact 33509707  T
Q  381 attggtaccttaatggtacaca 402  Q
    ||| ||||||||||||||||||    
T  33509706 attagtaccttaatggtacaca 33509685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 289 - 402
Target Start/End: Complemental strand, 44380371 - 44380259
Alignment:
Q  289 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 388  Q
    ||||||||| ||||||||||  |||||||||||||| ||||||||||||| |||| || ||| |||||| | ||||||||||| |||||| |||||||||    
T  44380371 gtggcacaccctttaaaaaag-tatatcaaataaagcatttataaagtaatattgataggtgacacactataattggtcaatagtatataccattggtac 44380273  T
Q  389 cttaatggtacaca 402  Q
    ||||||||||||||    
T  44380272 cttaatggtacaca 44380259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 285 - 402
Target Start/End: Complemental strand, 47426471 - 47426355
Alignment:
Q  285 ccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattg 384  Q
    ||||||||||||| |||||||||| ||||||||||||||| || ||||||||||||||| || ||| |||||||| ||||| ||||  ||||||  ||||    
T  47426471 ccatgtggcacaccctttaaaaaa-atatatcaaataaagcatctataaagtaacattgataggtgacacactctaattggccaatggtatatactattg 47426373  T
Q  385 gtaccttaatggtacaca 402  Q
    ||||||||||||||||||    
T  47426372 gtaccttaatggtacaca 47426355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 281 - 394
Target Start/End: Complemental strand, 37742850 - 37742738
Alignment:
Q  281 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 380  Q
    ||||||| ||||||||| |||||||||| ||||||||||||||| |||  ||| |||||||||||| |||||| ||||| ||||  ||||  |||||| |    
T  37742850 tgtgccacgtggcacactctttaaaaaa-atatatcaaataaagcattggtaatgtaacattggtaggtggcatactctaattgaccaatgatatatacc 37742752  T
Q  381 attggtaccttaat 394  Q
    ||||||||||||||    
T  37742751 attggtaccttaat 37742738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 282 - 355
Target Start/End: Complemental strand, 6023071 - 6022998
Alignment:
Q  282 gtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcaca 355  Q
    |||||| ||||||||| |||||||||| ||||||||||||||||| ||| ||| ||||||| ||||||||||||    
T  6023071 gtgccacgtggcacaccctttaaaaaatatatatcaaataaagtacttacaaaataacattagtatgtggcaca 6022998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 399
Target Start/End: Complemental strand, 35094655 - 35094554
Alignment:
Q  299 ctttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc--ttattggtcaatattatataacattggtaccttaatgg 396  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||| |||||| ||||  | ||| ||||||  |||||| || |||||| |||||||    
T  35094655 ctttaaaaaa-atatatcaaataaaatatttataaagtaacattggtaggtggcatactctataattagtcaatggtatataccactggtactttaatgg 35094557  T
Q  397 tac 399  Q
    |||    
T  35094556 tac 35094554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 21963073 - 21963119
Alignment:
Q  354 cactcttattggtcaatattatataacattggtaccttaatggtaca 400  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||    
T  21963073 cactcttattggtcaatgttatataacattgataccttaatggtaca 21963119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 402
Target Start/End: Original strand, 32319468 - 32319531
Alignment:
Q  339 cattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacaca 402  Q
    |||| ||| |||||||||||| ||||| ||||  |||||| |||||||||||||||||||||||    
T  32319468 catttgtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacaca 32319531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 402
Target Start/End: Original strand, 39498744 - 39498835
Alignment:
Q  311 tatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacaca 402  Q
    ||||| ||||||| |||||||||| |||||| | || ||| |||||| | ||||  ||||| |||||| ||||||||| |||||||||||||    
T  39498744 tatattaaataaaatatttataaaataacatcgataggtgacacactttaattgaccaataatatatatcattggtactttaatggtacaca 39498835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 402
Target Start/End: Original strand, 10018671 - 10018732
Alignment:
Q  341 ttggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacaca 402  Q
    |||||| |||||||||| ||||||  ||||  |||||||||||||||| |||||||||||||    
T  10018671 ttggtaggtggcacacttttattgaccaatggtatataacattggtactttaatggtacaca 10018732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 364
Target Start/End: Complemental strand, 17466390 - 17466316
Alignment:
Q  289 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattg 364  Q
    |||||| || |||||||||| ||||||||| ||||  |||||||||||||||||| || ||| |||||||| ||||    
T  17466390 gtggcataccctttaaaaaa-atatatcaactaaatcatttataaagtaacattgataggtgacacactctaattg 17466316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 402
Target Start/End: Original strand, 10179868 - 10179929
Alignment:
Q  341 ttggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacaca 402  Q
    |||||| |||||||||||| ||||  ||||  |||||| ||||||||| |||||||||||||    
T  10179868 ttggtaggtggcacactctaattgaccaatggtatataccattggtactttaatggtacaca 10179929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 402
Target Start/End: Complemental strand, 53440608 - 53440551
Alignment:
Q  345 tatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacaca 402  Q
    ||||||||||||| | |||||||| | |||||||||||||||| |  |||||||||||    
T  53440608 tatgtggcacactttcattggtcagtgttatataacattggtatcccaatggtacaca 53440551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 276 - 402
Target Start/End: Complemental strand, 52012909 - 52012783
Alignment:
Q  276 taaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattat 375  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  52012909 taaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaacatttataaagtaacattggtatgtggcacacttttattggtcaatgttat 52012810  T
Q  376 ataacattggtaccttaatggtacaca 402  Q
    |||||||||||||||||||||||||||    
T  52012809 ataacattggtaccttaatggtacaca 52012783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 276 - 398
Target Start/End: Original strand, 9799403 - 9799525
Alignment:
Q  276 taaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattat 375  Q
    ||||||||| |||||| ||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||| |||| ||||||||| ||||    
T  9799403 taaggtgtgacatgtgacacacactttaaaaaacatatattaaataaaacatttataaagtaacattggtatgtggcacattcttgttggtcaatgttat 9799502  T
Q  376 ataacattggtaccttaatggta 398  Q
    |||||||||||||||||||||||    
T  9799503 ataacattggtaccttaatggta 9799525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 276 - 402
Target Start/End: Complemental strand, 47943290 - 47943163
Alignment:
Q  276 taaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtc-aatatta 374  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||| ||| |||||||||||||||| | ||||||||| |||||||    
T  47943290 taaggtgtgacatgtggcacacattttaaaaaacatatatcaaataaaatatttataaaataatattggtatgtggcacatttttattggtcaaatatta 47943191  T
Q  375 tataacattggtaccttaatggtacaca 402  Q
    |||||||||||||  |||||||||||||    
T  47943190 tataacattggtattttaatggtacaca 47943163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 281 - 398
Target Start/End: Complemental strand, 21260919 - 21260803
Alignment:
Q  281 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 380  Q
    ||||||||||||||||| |||||||||| ||||||||||||||  ||||||||||||||||||||| ||| |||||||| ||||| ||||  |||||| |    
T  21260919 tgtgccatgtggcacaccctttaaaaaa-atatatcaaataaaacatttataaagtaacattggtaggtgacacactctaattggccaatgatatatatc 21260821  T
Q  381 attggtaccttaatggta 398  Q
    ||||||||||||||||||    
T  21260820 attggtaccttaatggta 21260803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 281 - 402
Target Start/End: Original strand, 33249420 - 33249540
Alignment:
Q  281 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 380  Q
    ||||||||||||||||| |||||||||  ||||||||||||||| ||||||||||||||||||||| ||| |||||||| ||||| ||||  |||||| |    
T  33249420 tgtgccatgtggcacaccctttaaaaat-atatatcaaataaagcatttataaagtaacattggtaggtgacacactctaattggccaattgtatatacc 33249518  T
Q  381 attggtaccttaatggtacaca 402  Q
    ||| ||||||||||||||||||    
T  33249519 atttgtaccttaatggtacaca 33249540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 281 - 398
Target Start/End: Complemental strand, 12473829 - 12473713
Alignment:
Q  281 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 380  Q
    |||| |||||| ||||| |||||||||| ||||||||||||||| || |||||||||||||||||| |||||||||||| ||||| ||||  |||||| |    
T  12473829 tgtgtcatgtgccacaccctttaaaaaa-atatatcaaataaagcatctataaagtaacattggtaggtggcacactctaattggccaatggtatatacc 12473731  T
Q  381 attggtaccttaatggta 398  Q
    ||||||||||||||||||    
T  12473730 attggtaccttaatggta 12473713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 281 - 398
Target Start/End: Complemental strand, 12528238 - 12528122
Alignment:
Q  281 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 380  Q
    |||| |||||| ||||| |||||||||| ||||||||||||||| || |||||||||||||||||| |||||||||||| ||||| ||||  |||||| |    
T  12528238 tgtgtcatgtgccacaccctttaaaaaa-atatatcaaataaagcatctataaagtaacattggtaggtggcacactctaattggccaatggtatatacc 12528140  T
Q  381 attggtaccttaatggta 398  Q
    ||||||||||||||||||    
T  12528139 attggtaccttaatggta 12528122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 314 - 384
Target Start/End: Complemental strand, 46720023 - 46719953
Alignment:
Q  314 atcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattg 384  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  46720023 atcaaataaagtatttataaagtaacatttgtatgtggcacactcttattggtcaatgttatataacattg 46719953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 281 - 402
Target Start/End: Complemental strand, 22343462 - 22343342
Alignment:
Q  281 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 380  Q
    |||| |||||||||||  |||||||| | ||||||||||||||| |||||||||||||||||| ||  || |||||||| ||||||||||  |||||| |    
T  22343462 tgtgtcatgtggcacatcctttaaaata-atatatcaaataaagcatttataaagtaacattgatagatgacacactctaattggtcaatgatatatacc 22343364  T
Q  381 attggtaccttaatggtacaca 402  Q
    |||| |||||||||||||||||    
T  22343363 attgataccttaatggtacaca 22343342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 289 - 402
Target Start/End: Original strand, 35869625 - 35869737
Alignment:
Q  289 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 388  Q
    ||||||||| ||||||||||  |||||||||||||  ||||||| ||||||||||||| |||||||| | | ||||||||||  |||||| |||||||||    
T  35869625 gtggcacaccctttaaaaaag-tatatcaaataaaacatttatatagtaacattggtaggtggcacattataattggtcaatggtatataccattggtac 35869723  T
Q  389 cttaatggtacaca 402  Q
    ||||||||||||||    
T  35869724 cttaatggtacaca 35869737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 290 - 401
Target Start/End: Complemental strand, 51812030 - 51811920
Alignment:
Q  290 tggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtacc 389  Q
    |||||||| |||||||||| |||||||||| |||  ||||||||||||||||||||| |||||| ||||| ||||| ||||| |||||| | ||| ||||    
T  51812030 tggcacaccctttaaaaaa-atatatcaaaaaaaaaatttataaagtaacattggtaggtggcatactctaattggccaataatatatatctttgatacc 51811932  T
Q  390 ttaatggtacac 401  Q
    ||||||||||||    
T  51811931 ttaatggtacac 51811920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 313 - 402
Target Start/End: Original strand, 52910126 - 52910215
Alignment:
Q  313 tatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacaca 402  Q
    |||||||||||| ||||||||||||| ||||||| |||||||||| | ||||| ||||  ||||||||||||||||| | ||||||||||    
T  52910126 tatcaaataaagcatttataaagtaatattggtaggtggcacactttaattggccaatggtatataacattggtaccattatggtacaca 52910215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 402
Target Start/End: Original strand, 49999662 - 49999754
Alignment:
Q  310 atatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacaca 402  Q
    ||||||||||||||| ||||||||| ||||||||||||||| |||||||| ||||  ||||   | |||||||| ||| ||| ||||||||||    
T  49999662 atatatcaaataaagcatttataaaataacattggtatgtgacacactctaattgaccaatgacacataacattagtatcttgatggtacaca 49999754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 402
Target Start/End: Complemental strand, 55590559 - 55590487
Alignment:
Q  330 ataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacaca 402  Q
    ||||||||||||||||| ||| |||||| | |||| |||||  |||||| |||||||||||||||||||||||    
T  55590559 ataaagtaacattggtaggtgacacactataattgatcaatgatatataccattggtaccttaatggtacaca 55590487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 321 - 400
Target Start/End: Original strand, 34829168 - 34829247
Alignment:
Q  321 aaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtaca 400  Q
    |||| ||||||||||||||||||||| ||| |||||| | ||||| || |  |||||| ||||||||||||||| |||||    
T  34829168 aaagcatttataaagtaacattggtaggtgacacactttaattggccattgatatatatcattggtaccttaatagtaca 34829247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 322
Target Start/End: Complemental strand, 46720247 - 46720200
Alignment:
Q  276 taaggtgtgccatgtggcacacactttaa-aaaacatatatcaaataa 322  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  46720247 taaggtgtgtcatgtggcacacactttaaaaaaacatatatcaaataa 46720200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 402
Target Start/End: Complemental strand, 49998541 - 49998487
Alignment:
Q  348 gtggcacactcttattggtcaatattatataacattggtaccttaatggtacaca 402  Q
    ||||||||| || ||||| ||||  ||||||| ||||||||||||||||||||||    
T  49998541 gtggcacaccctaattggccaatgatatataatattggtaccttaatggtacaca 49998487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 33174636 - 33174581
Alignment:
Q  283 tgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacat 341  Q
    ||||| ||||||||| |||||||||   |||||||||||||  ||||||||||||||||    
T  33174636 tgccacgtggcacaccctttaaaaa---tatatcaaataaaacatttataaagtaacat 33174581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 276 - 402
Target Start/End: Original strand, 8809680 - 8809806
Alignment:
Q  276 taaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattat 375  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  8809680 taaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaacatttataaagtaacattggtacgtggcacactcttattggtcaatgttat 8809779  T
Q  376 ataacattggtaccttaatggtacaca 402  Q
    |||||||||||||||||||||||||||    
T  8809780 ataacattggtaccttaatggtacaca 8809806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 276 - 398
Target Start/End: Complemental strand, 35998383 - 35998261
Alignment:
Q  276 taaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattat 375  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||  | ||||||| |||||||| |||||||||||||||||||  ||||| ||||    
T  35998383 taagatgtgccatgtggcacacactttaaaaaacatatataaaataaaacacttataaaataacattgatatgtggcacactcttattaatcaatgttat 35998284  T
Q  376 ataacattggtaccttaatggta 398  Q
    |||||||||||||||||||||||    
T  35998283 ataacattggtaccttaatggta 35998261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 281 - 402
Target Start/End: Original strand, 29119370 - 29119490
Alignment:
Q  281 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 380  Q
    ||||||||||||||||| |||||||||| ||||||||||||||| || |||||||||||| || || |||||||||||| ||||| ||||  |||||| |    
T  29119370 tgtgccatgtggcacaccctttaaaaaa-atatatcaaataaagcatctataaagtaacaatgataggtggcacactctaattggccaatggtatatacc 29119468  T
Q  381 attggtaccttaatggtacaca 402  Q
    ||||||||||||||||||||||    
T  29119469 attggtaccttaatggtacaca 29119490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 281 - 402
Target Start/End: Complemental strand, 32676261 - 32676141
Alignment:
Q  281 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 380  Q
    ||||||||||||||||  |||||||||| ||||||||||||||| ||||||||||||||||||||| ||||  || ||| ||||| ||||  |||||| |    
T  32676261 tgtgccatgtggcacatgctttaaaaaa-atatatcaaataaagcatttataaagtaacattggtaggtggtgcattctaattggccaatggtatatacc 32676163  T
Q  381 attggtaccttaatggtacaca 402  Q
    ||||||||||||||||||||||    
T  32676162 attggtaccttaatggtacaca 32676141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 281 - 402
Target Start/End: Complemental strand, 2569161 - 2569042
Alignment:
Q  281 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 380  Q
    |||||||  |||||||| ||||||||||  |||||||||||||| |||  ||| |||||||||||| |||||||||||| |||||  |||  |||||| |    
T  2569161 tgtgccacatggcacaccctttaaaaaa--tatatcaaataaagcattggtaatgtaacattggtaggtggcacactctaattggcaaatgatatatacc 2569064  T
Q  381 attggtaccttaatggtacaca 402  Q
    ||||||||||||||||||||||    
T  2569063 attggtaccttaatggtacaca 2569042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 276 - 400
Target Start/End: Complemental strand, 35534533 - 35534413
Alignment:
Q  276 taaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattat 375  Q
    ||||||||| |||||||||||| ||||||||||    ||| |||||||  | ||||||| | ||||| |||||||||||||||| | ||  |||| ||||    
T  35534533 taaggtgtgtcatgtggcacaccctttaaaaaa----tattaaataaaacacttataaattgacattagtatgtggcacactctcagtgtccaatgttat 35534438  T
Q  376 ataacattggtaccttaatggtaca 400  Q
    |||||||||||| ||||||| ||||    
T  35534437 ataacattggtatcttaatgataca 35534413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 346 - 402
Target Start/End: Original strand, 18056134 - 18056190
Alignment:
Q  346 atgtggcacactcttattggtcaatattatataacattggtaccttaatggtacaca 402  Q
    |||||||||||| | |||||||||||||||||||||||||||  |||||||||||||    
T  18056134 atgtggcacactttcattggtcaatattatataacattggtagtttaatggtacaca 18056190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 314 - 402
Target Start/End: Complemental strand, 25161402 - 25161314
Alignment:
Q  314 atcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacaca 402  Q
    ||||||||||  |||||||||||||||||| || |||||||||| | ||||||||||  |||||| |||||  || |||||||||||||    
T  25161402 atcaaataaaacatttataaagtaacattgttaggtggcacactgtaattggtcaatggtatataccattgagactttaatggtacaca 25161314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 394
Target Start/End: Complemental strand, 8462245 - 8462141
Alignment:
Q  289 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 388  Q
    ||||||| | ||||||||||  ||||| |||||||  ||||||||| ||||||||||| |||||||||| | |||| |||||  |||||| |||||||||    
T  8462245 gtggcacgccctttaaaaaag-tatattaaataaaacatttataaaataacattggtaggtggcacactataattgatcaatgatatataccattggtac 8462147  T
Q  389 cttaat 394  Q
     |||||    
T  8462146 tttaat 8462141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 310 - 402
Target Start/End: Complemental strand, 6223148 - 6223056
Alignment:
Q  310 atatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacaca 402  Q
    |||||||||||||| || ||||||| |||||||| ||| || |||||  | |||| |||||  |||||||||||| ||| |||||||||||||    
T  6223148 atatatcaaataaaatacttataaaataacattgatatatgacacaccttaattgatcaatgatatataacattgatactttaatggtacaca 6223056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 370
Target Start/End: Original strand, 3688917 - 3688972
Alignment:
Q  315 tcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaat 370  Q
    |||||||||  ||||||||||||||||||||| || | ||||||| ||||||||||    
T  3688917 tcaaataaaacatttataaagtaacattggtaggttgtacactctaattggtcaat 3688972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 367 - 402
Target Start/End: Original strand, 16679829 - 16679864
Alignment:
Q  367 caatattatataacattggtaccttaatggtacaca 402  Q
    ||||| ||||||||||||||||||||||||||||||    
T  16679829 caatagtatataacattggtaccttaatggtacaca 16679864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 402
Target Start/End: Original strand, 7214500 - 7214577
Alignment:
Q  325 tatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacaca 402  Q
    |||||||||||||| || | || ||| |||||||| ||||  ||||| ||||||  ||| ||||||||||||||||||    
T  7214500 tatttataaagtaatatcgataggtgacacactctaattgaccaataatatatactattagtaccttaatggtacaca 7214577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 402
Target Start/End: Original strand, 46435571 - 46435619
Alignment:
Q  354 cactcttattggtcaatattatataacattggtaccttaatggtacaca 402  Q
    |||||| ||||| ||||  |||||| |||||||||||||||||||||||    
T  46435571 cactctaattggccaattgtatataccattggtaccttaatggtacaca 46435619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 4e-51; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 276 - 402
Target Start/End: Complemental strand, 34245698 - 34245572
Alignment:
Q  276 taaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattat 375  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||    
T  34245698 taaggtgtgtcatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacacttttattggtcaatgttat 34245599  T
Q  376 ataacattggtaccttaatggtacaca 402  Q
    ||||||||  |||||||||||||||||    
T  34245598 ataacattaataccttaatggtacaca 34245572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 276 - 402
Target Start/End: Complemental strand, 11113682 - 11113561
Alignment:
Q  276 taaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattat 375  Q
    |||||||||||||||||| ||  ||||||||||     ||||||||||| | ||| ||||||||||| ||||||| |||||||||||| |||||| ||||    
T  11113682 taaggtgtgccatgtggcgcatcctttaaaaaa-----atcaaataaagcacttacaaagtaacattagtatgtgacacactcttattagtcaatgttat 11113588  T
Q  376 ataacattggtaccttaatggtacaca 402  Q
    ||| |||||||||||||||||||||||    
T  11113587 atagcattggtaccttaatggtacaca 11113561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 281 - 402
Target Start/End: Original strand, 1211890 - 1212010
Alignment:
Q  281 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 380  Q
    ||||||| ||||||||| |||||||||| ||||||||||||||| ||  ||||||||||||||  | ||||||||| || ||| | ||||  |||||| |    
T  1211890 tgtgccacgtggcacaccctttaaaaaa-atatatcaaataaagcatcgataaagtaacattgaaaggtggcacacactaattagccaatggtatatacc 1211988  T
Q  381 attggtaccttaatggtacaca 402  Q
    ||||||||||||||||||||||    
T  1211989 attggtaccttaatggtacaca 1212010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 299 - 402
Target Start/End: Original strand, 5403940 - 5404042
Alignment:
Q  299 ctttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggta 398  Q
    |||||||||| ||||||||||||||  || |||||||||||||||||| |||||| ||||| | ||  ||||| |||||| |||| ||||||||||||||    
T  5403940 ctttaaaaaa-atatatcaaataaaacatctataaagtaacattggtaggtggcagactctaactgaccaataatatataccattagtaccttaatggta 5404038  T
Q  399 caca 402  Q
    ||||    
T  5404039 caca 5404042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 402
Target Start/End: Original strand, 32644888 - 32645002
Alignment:
Q  286 catgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattgg 385  Q
    |||||||||||| |||||||||| ||||| |||||||||||||| |||||||||||| ||| ||| |||||  | ||||| ||||  ||||||  || |     
T  32644888 catgtggcacaccctttaaaaaa-atataacaaataaagtattt-taaagtaacatttgtaggtgacacaccttaattggccaatgatatatactatcga 32644985  T
Q  386 taccttaatggtacaca 402  Q
    || ||||||||||||||    
T  32644986 tatcttaatggtacaca 32645002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 387
Target Start/End: Complemental strand, 31030154 - 31030112
Alignment:
Q  345 tatgtggcacactcttattggtcaatattatataacattggta 387  Q
    ||||||||||||| ||||||  |||||||||||||||||||||    
T  31030154 tatgtggcacactgttattgaccaatattatataacattggta 31030112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 402
Target Start/End: Complemental strand, 11753232 - 11753172
Alignment:
Q  342 tggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacaca 402  Q
    ||||| |||| ||||||| ||||| | ||  |||||| |||||||||||||||||||||||    
T  11753232 tggtaggtgggacactctaattggccgatggtatataccattggtaccttaatggtacaca 11753172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 276 - 402
Target Start/End: Complemental strand, 1514934 - 1514808
Alignment:
Q  276 taaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattat 375  Q
    ||||||||| ||| ||| ||||| ||||||||| ||||||||||||||  |||||||||||||||||||||||||| |||||||||||| ||||| ||||    
T  1514934 taaggtgtgacatatggtacacattttaaaaaatatatatcaaataaaacatttataaagtaacattggtatgtggtacactcttattgatcaatgttat 1514835  T
Q  376 ataacattggtaccttaatggtacaca 402  Q
    |||||||||||||||||||||||||||    
T  1514834 ataacattggtaccttaatggtacaca 1514808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 289 - 400
Target Start/End: Complemental strand, 18168503 - 18168392
Alignment:
Q  289 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 388  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||||| ||||||| |||| ||||||| |||| |||||  |||||| |||||||||    
T  18168503 gtggcacatcctttaaaaaaaatatatcaaataaagtatttataaagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtac 18168404  T
Q  389 cttaatggtaca 400  Q
    ||||||||||||    
T  18168403 cttaatggtaca 18168392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 289 - 400
Target Start/End: Complemental strand, 18632060 - 18631949
Alignment:
Q  289 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 388  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||||| ||||||| |||| ||||||| |||| |||||  |||||| |||||||||    
T  18632060 gtggcacatcctttaaaaaaaatatatcaaataaagtatttataaagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtac 18631961  T
Q  389 cttaatggtaca 400  Q
    ||||||||||||    
T  18631960 cttaatggtaca 18631949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 281 - 402
Target Start/End: Original strand, 41179609 - 41179729
Alignment:
Q  281 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 380  Q
    ||||||||||||||||  | |||||||| |||||| |||||||  |||||||||||||||| |||| ||| |||||| | ||||| ||||  |||||| |    
T  41179609 tgtgccatgtggcacatccattaaaaaa-atatattaaataaaacatttataaagtaacatcggtaggtgacacactttaattggccaatgatatatatc 41179707  T
Q  381 attggtaccttaatggtacaca 402  Q
    ||||||||||||||||||||||    
T  41179708 attggtaccttaatggtacaca 41179729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 281 - 402
Target Start/End: Original strand, 24337876 - 24337996
Alignment:
Q  281 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 380  Q
    ||||| ||||||||||| |||||||||  ||||||||||||||| || ||||||||||||||||||  ||||||||||| ||||  | ||  |||||| |    
T  24337876 tgtgctatgtggcacaccctttaaaaat-atatatcaaataaagcatctataaagtaacattggtagatggcacactctaattgaccgatggtatatacc 24337974  T
Q  381 attggtaccttaatggtacaca 402  Q
    |||| ||||||||| |||||||    
T  24337975 attgctaccttaatagtacaca 24337996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 281 - 399
Target Start/End: Original strand, 4708353 - 4708470
Alignment:
Q  281 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 380  Q
    ||||||| ||||||||| |||||||||  ||||||||||||||  ||||||||||||||||||||| ||| |||||| | |||||   ||  |||||  |    
T  4708353 tgtgccacgtggcacaccctttaaaaat-atatatcaaataaaacatttataaagtaacattggtaggtgacacactttaattggcgcatgatatatgcc 4708451  T
Q  381 attggtaccttaatggtac 399  Q
    |||||||||||| ||||||    
T  4708452 attggtaccttagtggtac 4708470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 402
Target Start/End: Original strand, 11254082 - 11254193
Alignment:
Q  289 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 388  Q
    ||||||||| |||||||||   |||||||||||||  ||||||||||||||||||||| |||| | |||  || ||||||||  |||||| ||||||||     
T  11254082 gtggcacaccctttaaaaatg-tatatcaaataaaacatttataaagtaacattggtaggtggtatact-ataatggtcaatgatatatatcattggtaa 11254179  T
Q  389 cttaatggtacaca 402  Q
     |||||||||||||    
T  11254180 tttaatggtacaca 11254193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 402
Target Start/End: Original strand, 32825876 - 32826001
Alignment:
Q  276 taaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattat 375  Q
    |||| |||| |||||| ||||  |||| ||||| ||||||||||||||  |  |||||| |||||||| |||||| || ||||| ||||| ||||  |||    
T  32825876 taagatgtgtcatgtgacacaaccttttaaaaa-atatatcaaataaaacacatataaaataacattgatatgtgacatactctaattggccaatggtat 32825974  T
Q  376 ataacattggtaccttaatggtacaca 402  Q
    | ||||||| ||| |||||||||||||    
T  32825975 acaacattgatactttaatggtacaca 32826001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 293 - 402
Target Start/End: Complemental strand, 34306 - 34199
Alignment:
Q  293 cacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtacctta 392  Q
    ||||| ||||||||||  ||||||||||||| |||||||||||||| ||||||| |||||||||||| ||||| ||||| |||||| |||||||||||||    
T  34306 cacaccctttaaaaaa--tatatcaaataaaatatttataaagtaatattggtaagtggcacactctaattggccaataatatataccattggtacctta 34209  T
Q  393 atggtacaca 402  Q
    ||||||||||    
T  34208 atggtacaca 34199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 289 - 402
Target Start/End: Complemental strand, 35341653 - 35341541
Alignment:
Q  289 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 388  Q
    ||||||||| ||||||||||  |||||||||||||  ||||||||||||||||||||| |||||||||| | ||||||||||  |||||| |||||||||    
T  35341653 gtggcacaccctttaaaaaag-tatatcaaataaaacatttataaagtaacattggtaggtggcacactataattggtcaatggtatatatcattggtac 35341555  T
Q  389 cttaatggtacaca 402  Q
    ||||||||||||||    
T  35341554 cttaatggtacaca 35341541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 286 - 402
Target Start/End: Complemental strand, 48250274 - 48250159
Alignment:
Q  286 catgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattgg 385  Q
    ||||| ||| || |||||||||| | ||||||||||||| || |||||||||||||||||| |||||||||||| ||||  ||||  |||||| ||||||    
T  48250274 catgtagcataccctttaaaaaaaa-atatcaaataaagcatctataaagtaacattggtaggtggcacactctaattgaccaatgatatatatcattgg 48250176  T
Q  386 taccttaatggtacaca 402  Q
    |||||||||||||||||    
T  48250175 taccttaatggtacaca 48250159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 281 - 402
Target Start/End: Complemental strand, 48072512 - 48072394
Alignment:
Q  281 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 380  Q
    ||||||| ||||||||| |||||||||| ||| |||||||||| |||||||||| ||||||||  |||||||||||||| |||| |||||  ||||  |     
T  48072512 tgtgccacgtggcacaccctttaaaaaa-atacatcaaataaaatatttataaaataacattgaaatgtggcacactctaattgatcaatggtatacta- 48072415  T
Q  381 attggtaccttaatggtacaca 402  Q
     ||||||||||||| |||||||    
T  48072414 -ttggtaccttaatagtacaca 48072394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 289 - 343
Target Start/End: Original strand, 32694624 - 32694677
Alignment:
Q  289 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattg 343  Q
    ||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||    
T  32694624 gtggcacaccctttaaaaaa-atatatcaaataaagaatttataaagtaacattg 32694677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 402
Target Start/End: Original strand, 31306951 - 31307040
Alignment:
Q  314 atcaaataaagtatttataaagtaacattggtatgtggcacactct-tattggtcaatattatataacattggtaccttaatggtacaca 402  Q
    ||||||||||| ||||||||||||||||||||| || ||||||| |  ||||| ||||  |||||| ||||| ||| |||||||||||||    
T  31306951 atcaaataaagcatttataaagtaacattggtaggtagcacactttaaattggacaatgatatatatcattgatactttaatggtacaca 31307040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 281 - 402
Target Start/End: Original strand, 13051 - 13172
Alignment:
Q  281 tgtgccatgtggcaca-cactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataa 379  Q
    ||||||| |||||||| | |||||||||| ||||||||||||||| ||  ||||||||||||||  | ||||||||| || ||| | ||||  ||||||     
T  13051 tgtgccacgtggcacaaccctttaaaaaa-atatatcaaataaagcatcgataaagtaacattgaaaggtggcacacactaattagccaatggtatatac 13149  T
Q  380 cattggtaccttaatggtacaca 402  Q
    |||||||||||||||||||||||    
T  13150 cattggtaccttaatggtacaca 13172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 370
Target Start/End: Original strand, 23168 - 23233
Alignment:
Q  305 aaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaat 370  Q
    |||| |||||||||||||| |||||||||||||| ||||||| |||||||||||| ||||| ||||    
T  23168 aaaaaatatatcaaataaaatatttataaagtaaaattggtaggtggcacactctaattggccaat 23233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 402
Target Start/End: Complemental strand, 11311 - 11200
Alignment:
Q  289 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 388  Q
    ||||||||| |||||||||   |||||||||||||  ||||||||||||||||||||| |||| | |||  || ||||||||  |||||| ||||||||     
T  11311 gtggcacaccctttaaaaatg-tatatcaaataaaacatttataaagtaacattggtaggtggtatact-ataatggtcaatgatatatatcattggtaa 11214  T
Q  389 cttaatggtacaca 402  Q
     |||||||||||||    
T  11213 tttaatggtacaca 11200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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