View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_84 (Length: 401)

Name: NF11737A_low_84
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_84
NF11737A_low_84
[»] chr2 (6 HSPs)
chr2 (19-385)||(21831950-21832321)
chr2 (274-369)||(29900270-29900362)
chr2 (41-121)||(26172340-26172420)
chr2 (40-170)||(31508244-31508374)
chr2 (70-160)||(29900019-29900109)
chr2 (302-372)||(31508001-31508071)
[»] chr8 (3 HSPs)
chr8 (39-372)||(23715326-23715667)
chr8 (40-170)||(44118208-44118338)
chr8 (274-371)||(44117951-44118048)
[»] chr4 (5 HSPs)
chr4 (276-372)||(55763576-55763669)
chr4 (276-372)||(55827956-55828049)
chr4 (40-242)||(55763299-55763503)
chr4 (78-242)||(55740539-55740705)
chr4 (40-160)||(55827679-55827799)
[»] chr7 (8 HSPs)
chr7 (62-161)||(13952455-13952554)
chr7 (39-170)||(3939381-3939509)
chr7 (40-170)||(31593466-31593596)
chr7 (41-159)||(11408838-11408953)
chr7 (336-374)||(11408596-11408634)
chr7 (331-370)||(13908769-13908808)
chr7 (332-369)||(6322459-6322496)
chr7 (336-364)||(28509535-28509563)
[»] chr1 (3 HSPs)
chr1 (40-161)||(27108224-27108345)
chr1 (40-152)||(18240594-18240706)
chr1 (332-372)||(27107957-27107997)
[»] scaffold0537 (1 HSPs)
scaffold0537 (40-160)||(1008-1128)
[»] scaffold0916 (2 HSPs)
scaffold0916 (302-372)||(1497-1567)
scaffold0916 (48-147)||(1196-1295)
[»] scaffold0184 (1 HSPs)
scaffold0184 (40-145)||(27456-27561)
[»] scaffold0078 (1 HSPs)
scaffold0078 (40-145)||(45283-45388)
[»] scaffold0251 (1 HSPs)
scaffold0251 (40-160)||(844-964)
[»] chr3 (4 HSPs)
chr3 (40-160)||(18945205-18945325)
chr3 (274-372)||(18906220-18906318)
chr3 (40-160)||(18896303-18896423)
chr3 (332-368)||(38109298-38109334)
[»] chr6 (1 HSPs)
chr6 (332-372)||(1258914-1258954)


Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 385
Target Start/End: Original strand, 21831950 - 21832321
Alignment:
Q  19 catcagaaagattgggaagtgcaaaactcgtatgttccaaatactcgaaagcgcagggacccgaggctagttagagatagctcacagtcatagatggatt 118  Q
    |||||||||||| |||| | ||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||| |||| ||||    
T  21831950 catcagaaagatcgggaggagcaaaactcgtatgttccaaagactcgaaaacgcagggacccgaggctagttggagatagctcacagtcacagatagatt 21832049  T
Q  119 actctttccgagtggttgatccgacacaagcgcatgagtatgtcgagtatgcnnnnnnnatttgagggatacaatcggatgcaggagg------aggat- 211  Q
    |||| | |||||||||||||||||||||||||||||||||||||||||||||       |||||||| ||||||||||||||||||||      |||||     
T  21832050 actcctcccgagtggttgatccgacacaagcgcatgagtatgtcgagtatgcgggggg-atttgaggtatacaatcggatgcaggaggaggcagaggatg 21832148  T
Q  212 atgttatatcagcagcaggaggaggcagaggacgaggatgctgaggcagatgatattgtgcctgagcctgagcccgagcctcggcgacgtcgtcttcgtg 311  Q
    | |   |  ||| || | ||||| || ||||  ||  ||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21832149 aggaggtggcag-aggacgaggatgctgaggcagattatcttgaggcagatgatattgtgcctgagcctgagcccgagcctcggcaacgtcgtcttcgtg 21832247  T
Q  312 ctccgttgataccatcctgccctgttgtagggcctccctttcctggaggtcctgagaccacacatttgatgtcc 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21832248 ctccgttgataccatcctgccctgttgtagggcctccctttcctggaggtcctgagaccacacatttgttgtcc 21832321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 274 - 369
Target Start/End: Original strand, 29900270 - 29900362
Alignment:
Q  274 tgagcctgagcccgagcctcggcgacgtcgtcttcgtgctccgttgataccatcctgccctgttgtagggcctccctttcctggaggtcctgagac 369  Q
    |||| |||||||| || |||||||||||||||   ||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  29900270 tgagtctgagccccagactcggcgacgtcgtc---gtgttccgttgatacctccctgccctgttgtagggcctccctttcctggaggtcctgagac 29900362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 41 - 121
Target Start/End: Original strand, 26172340 - 26172420
Alignment:
Q  41 aaaactcgtatgttccaaatactcgaaagcgcagggacccgaggctagttagagatagctcacagtcatagatggattact 121  Q
    ||||| || |||| ||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| | ||||||||||    
T  26172340 aaaacccgcatgtcccaaagactcggaagcgcagggacccgaggctagttggagatagctcacagtcacaaatggattact 26172420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 170
Target Start/End: Complemental strand, 31508374 - 31508244
Alignment:
Q  40 caaaactcgtatgttccaaatactcgaaagcgcagggacccgaggctagttagagatagctcacagtcatagatggattactctttccgagtggttgatc 139  Q
    |||||| ||||||| || || ||||| |||||||||||||||||| ||| | ||||  | |||||  || || |||||||||| | ||  ||||||||||    
T  31508374 caaaacccgtatgtccctaagactcggaagcgcagggacccgaggatagatggagagggatcacacgcacaggtggattactcctcccaggtggttgatc 31508275  T
Q  140 cgacacaagcgcatgagtatgtcgagtatgc 170  Q
    |||||| ||||||||| ||||| | ||||||    
T  31508274 cgacaccagcgcatgattatgttgggtatgc 31508244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 160
Target Start/End: Original strand, 29900019 - 29900109
Alignment:
Q  70 cgcagggacccgaggctagttagagatagctcacagtcatagatggattactctttccgagtggttgatccgacacaagcgcatgagtatg 160  Q
    ||||||||||||||||||||| ||||   |||||||||  |||||| |||||| | ||  |||||||||||||| ||| || ||| |||||    
T  29900019 cgcagggacccgaggctagttggagaggactcacagtcgcagatgggttactcctcccaggtggttgatccgacgcaaacgtatgggtatg 29900109  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 372
Target Start/End: Complemental strand, 31508071 - 31508001
Alignment:
Q  302 cgtcttcgtgctccgttgataccatcctgccctgttgtagggcctccctttcctggaggtcctgagaccac 372  Q
    |||| ||||| ||||||||||||  | |  ||||||| ||||||||||||||||||||| | |||||||||    
T  31508071 cgtcgtcgtgttccgttgataccgccgtatcctgttggagggcctccctttcctggaggacttgagaccac 31508001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 8e-34; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 39 - 372
Target Start/End: Complemental strand, 23715667 - 23715326
Alignment:
Q  39 gcaaaactcgtatgttccaaatactcgaaagcgcagggacccgaggctagttagagatagctcacagtcatagatggattactctttccgagtggttgat 138  Q
    ||||||| ||||||||||||| ||||||||||| |||||| |||| | || |  ||| |||||| ||| | ||||||||||||||| || ||||||||||    
T  23715667 gcaaaacccgtatgttccaaagactcgaaagcgtagggacgcgagacaaggtgtagagagctcatagtaacagatggattactcttcccaagtggttgat 23715568  T
Q  139 ccgacacaagcgcatgagtatgtcgagtatgcnnnnnnnatttgagggatacaatcggatgcaggaggaggatatgttatatcagcagcaggaggaggca 238  Q
    | |||||| | |||||||||||  | ||||||       ||||||||||||  |||||||| ||||||||| |||||| ||||| | | |||||||| ||    
T  23715567 ctgacacaggtgcatgagtatgctgggtatgcgggggggatttgagggatatgatcggatggaggaggaggctatgtt-tatcaaccgtaggaggagaca 23715469  T
Q  239 gagga------------------cgaggatgctgaggcagatgatattgtgcctgagcctgagcccgagcctcggcgacgtcgtcttcgtgctccgttga 320  Q
    |||||                  ||| |||| |||||||||||||||||||||||||| ||     |||||||||||| ||||||   ||||||||||||    
T  23715468 gaggatggggaggtgggagaggacgatgatgttgaggcagatgatattgtgcctgagc-tg-----gagcctcggcgatgtcgtc---gtgctccgttga 23715378  T
Q  321 taccatcctgccctgttgtagggcctccctttcctggaggtcctgagaccac 372  Q
    ||||  | ||||||||| |||||||||||||||||||||||| |||||||||    
T  23715377 taccgccatgccctgttatagggcctccctttcctggaggtcttgagaccac 23715326  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 170
Target Start/End: Complemental strand, 44118338 - 44118208
Alignment:
Q  40 caaaactcgtatgttccaaatactcgaaagcgcagggacccgaggctagttagagatagctcacagtcatagatggattactctttccgagtggttgatc 139  Q
    |||||| ||||||| |  || ||||| |||||||||||||||||| ||  | ||||  |||||||| || || |||||||||| | ||  ||||||||||    
T  44118338 caaaacccgtatgtccataagactcggaagcgcagggacccgaggatatatggagagggctcacaggcacaggtggattactcctcccaggtggttgatc 44118239  T
Q  140 cgacacaagcgcatgagtatgtcgagtatgc 170  Q
    |||||| ||||||||| ||||| | ||||||    
T  44118238 cgacaccagcgcatgattatgttgggtatgc 44118208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 371
Target Start/End: Complemental strand, 44118048 - 44117951
Alignment:
Q  274 tgagcctgagcccgagcctcggcgacgtcgtcttcgtgctccgttgataccatcctgccctgttgtagggcctccctttcctggaggtcctgagacca 371  Q
    ||||||||||||  || ||| || ||| |||  ||||| |||||||||||  || |  ||||||| |||||||||||||||| |||| ||||||||||    
T  44118048 tgagcctgagcctcagactcagccacgacgttgtcgtgttccgttgatactgtcgtatcctgttggagggcctccctttcctagaggacctgagacca 44117951  T

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Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 276 - 372
Target Start/End: Original strand, 55763576 - 55763669
Alignment:
Q  276 agcctgagcccgagcctcggcgacgtcgtcttcgtgctccgttgataccatcctgccctgttgtagggcctccctttcctggaggtcctgagaccac 372  Q
    |||||||||||||| |||||||||||||||   ||| ||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  55763576 agcctgagcccgagtctcggcgacgtcgtc---gtggtccattgataccgtcgtgccctgttgtagggcctccctttcctggaggtcctgagaccac 55763669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 276 - 372
Target Start/End: Original strand, 55827956 - 55828049
Alignment:
Q  276 agcctgagcccgagcctcggcgacgtcgtcttcgtgctccgttgataccatcctgccctgttgtagggcctccctttcctggaggtcctgagaccac 372  Q
    ||||| |||||||| |||||||||||||||   ||| |||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||    
T  55827956 agcctaagcccgagtctcggcgacgtcgtc---gtggtccgttgataccgtcgtgccctgttgtagggcctccctttcctggaggtcttgagaccac 55828049  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 40 - 242
Target Start/End: Original strand, 55763299 - 55763503
Alignment:
Q  40 caaaactcgtatgttccaaatactcgaaagcgcagggacccgaggctagttagagatagctcacagtcatagatggattactctttccgagtggttgatc 139  Q
    |||||| | ||||| ||||| ||| ||||||||||| |||||||| ||||| |||||||||| ||| || | ||||||||||| | |   ||||||||||    
T  55763299 caaaacacctatgtcccaaagactagaaagcgcaggaacccgagggtagttggagatagctcgcagacacaaatggattactcctcctaggtggttgatc 55763398  T
Q  140 cgacacaagcgcatgagtatgtcgagtatgc--nnnnnnnatttgagggatacaatcggatgcaggaggaggatatgttatatcagcagcaggaggaggc 237  Q
      ||||| ||||| |||||||||| ||||||         |||| |||||||  |||||||| ||||||| |||||||| |||||||  || ||||||||    
T  55763399 taacacaggcgcaagagtatgtcgggtatgccgcggagggatttcagggatatgatcggatggaggaggatgatatgttttatcagccacatgaggaggc 55763498  T
Q  238 agagg 242  Q
    |||||    
T  55763499 agagg 55763503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 78 - 242
Target Start/End: Complemental strand, 55740705 - 55740539
Alignment:
Q  78 cccgaggctagttagagatagctcacagtcatagatggattactctttccgagtggttgatccgacacaagcgcatgagtatgtcgagtatgc--nnnnn 175  Q
    ||||||| ||||| |||||||||| ||| || | ||||||||||| |  |  |||||||||| |||||| ||||| |||||||||| ||||||           
T  55740705 cccgagggtagttggagatagctcgcagacacatatggattactcctctcaggtggttgatctgacacaggcgcaagagtatgtcgggtatgctgcggag 55740606  T
Q  176 nnatttgagggatacaatcggatgcaggaggaggatatgttatatcagcagcaggaggaggcagagg 242  Q
      |||| | |||||  |||||||| ||||||| |||| ||| ||||||| |||||||||||||||||    
T  55740605 ggatttcaaggatatgatcggatggaggaggatgataggttttatcagccgcaggaggaggcagagg 55740539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 160
Target Start/End: Original strand, 55827679 - 55827799
Alignment:
Q  40 caaaactcgtatgttccaaatactcgaaagcgcagggacccgaggctagttagagatagctcacagtcatagatggattactctttccgagtggttgatc 139  Q
    |||||| | ||||| ||||| ||| ||||||||||| |||||||| |||||  ||||||||| ||| || | ||||||||||| | |   ||||||||||    
T  55827679 caaaacacctatgtcccaaagactagaaagcgcaggaacccgagggtagttgaagatagctcgcagacacaaatggattactcctcctaggtggttgatc 55827778  T
Q  140 cgacacaagcgcatgagtatg 160  Q
      ||||| ||||| |||||||    
T  55827779 taacacaggcgcaagagtatg 55827799  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 62 - 161
Target Start/End: Complemental strand, 13952554 - 13952455
Alignment:
Q  62 ctcgaaagcgcagggacccgaggctagttagagatagctcacagtcatagatggattactctttccgagtggttgatccgacacaagcgcatgagtatgt 161  Q
    |||| ||| |||||||| ||||||||||| ||||  ||||||||||  ||||||||||||||| ||  |||||||||||||||||| || ||||||||||    
T  13952554 ctcggaagtgcagggactcgaggctagttggagagggctcacagtcgcagatggattactcttcccaggtggttgatccgacacaaacgtatgagtatgt 13952455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 39 - 170
Target Start/End: Original strand, 3939381 - 3939509
Alignment:
Q  39 gcaaaactcgtatgttccaaatactcgaaagcgcagggacccgaggctagttagagatagctcacagtcatagatggattactctttccgagtggttgat 138  Q
    ||||||| | ||||| ||||| || |||||||| ||||||   ||||||| | || |||||||| ||||| |||||||||||||   ||  |||||||||    
T  3939381 gcaaaacccatatgtcccaaagacccgaaagcgtagggacgtaaggctagatggatatagctcatagtcacagatggattactc---ccaggtggttgat 3939477  T
Q  139 ccgacacaagcgcatgagtatgtcgagtatgc 170  Q
    |||||||||||||||||||||| || ||||||    
T  3939478 ccgacacaagcgcatgagtatgccgggtatgc 3939509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 170
Target Start/End: Original strand, 31593466 - 31593596
Alignment:
Q  40 caaaactcgtatgttccaaatactcgaaagcgcagggacccgaggctagttagagatagctcacagtcatagatggattactctttccgagtggttgatc 139  Q
    |||||| ||||||| || || ||||| |||||||||||||||||| ||| | ||||  |||||||  || || |||||||||| | ||  ||||||||||    
T  31593466 caaaacccgtatgtccctaagactcggaagcgcagggacccgaggatagatggagagggctcacaagcacaggtggattactcctcccaggtggttgatc 31593565  T
Q  140 cgacacaagcgcatgagtatgtcgagtatgc 170  Q
    |||||| ||||||||| ||||| | ||||||    
T  31593566 cgacaccagcgcatgattatgttgggtatgc 31593596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 41 - 159
Target Start/End: Complemental strand, 11408953 - 11408838
Alignment:
Q  41 aaaactcgtatgttccaaatactcgaaagcgcagggacccgaggctagttagagatagctcacagtcatagatggattactctttccgagtggttgatcc 140  Q
    |||||| |||||||| ||| || || ||||| |||||| ||||||||| | ||||  ||||||||||| |||||||||||||   ||  ||||| |||||    
T  11408953 aaaacttgtatgttctaaagacccggaagcgtagggacgcgaggctaggtggagagggctcacagtcacagatggattactc---ccaggtggtggatcc 11408857  T
Q  141 gacacaagcgcatgagtat 159  Q
    |||||||| ||||||||||    
T  11408856 gacacaagtgcatgagtat 11408838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 374
Target Start/End: Complemental strand, 11408634 - 11408596
Alignment:
Q  336 ttgtagggcctccctttcctggaggtcctgagaccacac 374  Q
    |||||||||||||||||||||||||||||||||||||||    
T  11408634 ttgtagggcctccctttcctggaggtcctgagaccacac 11408596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 370
Target Start/End: Complemental strand, 13908808 - 13908769
Alignment:
Q  331 ccctgttgtagggcctccctttcctggaggtcctgagacc 370  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  13908808 ccctgttgtagggtctccctttcctggaggtcctgagacc 13908769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 369
Target Start/End: Complemental strand, 6322496 - 6322459
Alignment:
Q  332 cctgttgtagggcctccctttcctggaggtcctgagac 369  Q
    ||||||| ||||||||||||||||||||| ||||||||    
T  6322496 cctgttggagggcctccctttcctggaggacctgagac 6322459  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 364
Target Start/End: Complemental strand, 28509563 - 28509535
Alignment:
Q  336 ttgtagggcctccctttcctggaggtcct 364  Q
    |||||||||||||||||||||||||||||    
T  28509563 ttgtagggcctccctttcctggaggtcct 28509535  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 161
Target Start/End: Complemental strand, 27108345 - 27108224
Alignment:
Q  40 caaaactcgtatgttccaaatactcgaaagcgcagggacccgaggctagttagagatagctcacagtcatagatggattactctttccgagtggttgatc 139  Q
    ||||||| |||||| || || ||||| |||||||||||||||||| ||| | ||||  ||||||||  | || |||||||||| | ||  ||||||||||    
T  27108345 caaaacttgtatgtccctaagactcggaagcgcagggacccgaggatagatggagagggctcacaggtacaggtggattactcctcccaggtggttgatc 27108246  T
Q  140 cgacacaagcgcatgagtatgt 161  Q
    |||||| ||||||||| |||||    
T  27108245 cgacaccagcgcatgattatgt 27108224  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 40 - 152
Target Start/End: Original strand, 18240594 - 18240706
Alignment:
Q  40 caaaactcgtatgttccaaatactcgaaagcgcagggacccgaggctagttagagatagctcacagtcatagatggattactctttccgagtggttgatc 139  Q
    |||||| | ||||| || || ||||| |||||||||||||||||| ||| | ||||  |||||||| || || |||||||||| | ||  ||||||||||    
T  18240594 caaaacccatatgtccctaagactcggaagcgcagggacccgaggatagatggagagggctcacaggcacaggtggattactcctcccaggtggttgatc 18240693  T
Q  140 cgacacaagcgca 152  Q
    |||||| ||||||    
T  18240694 cgacaccagcgca 18240706  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 372
Target Start/End: Complemental strand, 27107997 - 27107957
Alignment:
Q  332 cctgttgtagggcctccctttcctggaggtcctgagaccac 372  Q
    ||||||| ||||||||||||||||||||| || ||||||||    
T  27107997 cctgttggagggcctccctttcctggaggaccagagaccac 27107957  T

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Target: scaffold0537 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0537
Description:

Target: scaffold0537; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 160
Target Start/End: Complemental strand, 1128 - 1008
Alignment:
Q  40 caaaactcgtatgttccaaatactcgaaagcgcagggacccgaggctagttagagatagctcacagtcatagatggattactctttccgagtggttgatc 139  Q
    |||||| ||||||| || || ||||| |||||||||||||||||| ||| | ||||  |||||||| || || |||||||||| | ||  || |||||||    
T  1128 caaaacccgtatgtccctaagactcggaagcgcagggacccgaggatagatggagagggctcacaggcacaggtggattactcctcccaggtagttgatc 1029  T
Q  140 cgacacaagcgcatgagtatg 160  Q
    |||||| ||||||||| ||||    
T  1028 cgacaccagcgcatgattatg 1008  T

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Target: scaffold0916 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0916
Description:

Target: scaffold0916; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 302 - 372
Target Start/End: Original strand, 1497 - 1567
Alignment:
Q  302 cgtcttcgtgctccgttgataccatcctgccctgttgtagggcctccctttcctggaggtcctgagaccac 372  Q
    |||| ||||| | |||||||||| || |||||| ||||||||| |||||||||||||||||| ||||||||    
T  1497 cgtcgtcgtgtttcgttgataccgtcgtgccctattgtagggcttccctttcctggaggtccagagaccac 1567  T

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Target: scaffold0916; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 147
Target Start/End: Original strand, 1196 - 1295
Alignment:
Q  48 gtatgttccaaatactcgaaagcgcagggacccgaggctagttagagatagctcacagtcatagatggattactctttccgagtggttgatccgacacaa 147  Q
    |||||| | ||| ||||| ||| ||| ||| |||||||||||| ||||  ||||||||||| ||||||||||||| | |   |||||||||||| |||||    
T  1196 gtatgtcctaaagactcggaagtgcaaggagccgaggctagttggagagggctcacagtcacagatggattactcctcctaggtggttgatccggcacaa 1295  T

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Target: scaffold0184 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 145
Target Start/End: Complemental strand, 27561 - 27456
Alignment:
Q  40 caaaactcgtatgttccaaatactcgaaagcgcagggacccgaggctagttagagatagctcacagtcatagatggattactctttccgagtggttgatc 139  Q
    ||||| |||||||| || || ||||| |||||||||||||||||| ||| | ||||  ||||||||  |||| |||||||||| | ||  ||||||||||    
T  27561 caaaattcgtatgtccctaagactcggaagcgcagggacccgaggatagatggagagggctcacaggaataggtggattactcctcccaggtggttgatc 27462  T
Q  140 cgacac 145  Q
    ||||||    
T  27461 cgacac 27456  T

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Target: scaffold0078 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 145
Target Start/End: Original strand, 45283 - 45388
Alignment:
Q  40 caaaactcgtatgttccaaatactcgaaagcgcagggacccgaggctagttagagatagctcacagtcatagatggattactctttccgagtggttgatc 139  Q
    ||||| |||||||| || || ||||| |||||||||||||||||| ||| | ||||  ||||||||  |||| |||||||||| | ||  ||||||||||    
T  45283 caaaattcgtatgtccctaagactcggaagcgcagggacccgaggatagatggagagggctcacaggaataggtggattactcctcccaggtggttgatc 45382  T
Q  140 cgacac 145  Q
    ||||||    
T  45383 cgacac 45388  T

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Target: scaffold0251 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 40 - 160
Target Start/End: Complemental strand, 964 - 844
Alignment:
Q  40 caaaactcgtatgttccaaatactcgaaagcgcagggacccgaggctagttagagatagctcacagtcatagatggattactctttccgagtggttgatc 139  Q
    |||||| ||||||| || || ||||| |||||||||||||||||| ||| | ||||  |||||||| || || |||||||||| | |   |||||||||     
T  964 caaaacccgtatgtccctaagactcggaagcgcagggacccgaggatagatggagagggctcacaggcacaggtggattactcctactaggtggttgatt 865  T
Q  140 cgacacaagcgcatgagtatg 160  Q
    |||||| ||||||||| ||||    
T  864 cgacaccagcgcatgattatg 844  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 160
Target Start/End: Complemental strand, 18945325 - 18945205
Alignment:
Q  40 caaaactcgtatgttccaaatactcgaaagcgcagggacccgaggctagttagagatagctcacagtcatagatggattactctttccgagtggttgatc 139  Q
    |||||| ||||||| || || ||||||||||| ||| ||  |||||||| |  ||| ||||||||| || | ||||||||||| | ||  ||||||||||    
T  18945325 caaaacccgtatgtcccgaagactcgaaagcggaggaacgtgaggctaggtgtagagagctcacagccacatatggattactcctcccaggtggttgatc 18945226  T
Q  140 cgacacaagcgcatgagtatg 160  Q
    |||||||  || |||||||||    
T  18945225 cgacacagacgtatgagtatg 18945205  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 372
Target Start/End: Original strand, 18906220 - 18906318
Alignment:
Q  274 tgagcctgagcccgagcctcggcgacgtcgtcttcgtgctccgttgataccatcctgccctgttgtagggcctccctttcctggaggtcctgagaccac 372  Q
    ||||||||||||  || ||| || ||| |||| ||||| ||||||||||||  | |  ||||||| ||||||||| |||||| |||| |||||||||||    
T  18906220 tgagcctgagcctcagactcagccacgacgtcgtcgtggtccgttgataccgccgtatcctgttggagggcctccatttcctagaggacctgagaccac 18906318  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 160
Target Start/End: Original strand, 18896303 - 18896423
Alignment:
Q  40 caaaactcgtatgttccaaatactcgaaagcgcagggacccgaggctagttagagatagctcacagtcatagatggattactctttccgagtggttgatc 139  Q
    |||||||||||||| || || ||||| ||||||| |||||||| | ||| | ||||  ||||| || || || |||||||||| | ||  ||||||||||    
T  18896303 caaaactcgtatgtccctaagactcggaagcgcatggacccgatgatagatggagagggctcataggcacaggtggattactcctcccatgtggttgatc 18896402  T
Q  140 cgacacaagcgcatgagtatg 160  Q
    | | || ||||||||| ||||    
T  18896403 caaaaccagcgcatgattatg 18896423  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 38109298 - 38109334
Alignment:
Q  332 cctgttgtagggcctccctttcctggaggtcctgaga 368  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  38109298 cctgttggagggcctccctttcctggaggccctgaga 38109334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 372
Target Start/End: Complemental strand, 1258954 - 1258914
Alignment:
Q  332 cctgttgtagggcctccctttcctggaggtcctgagaccac 372  Q
    ||||||| ||||||||||||| ||||||| |||||||||||    
T  1258954 cctgttggagggcctcccttttctggaggacctgagaccac 1258914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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