View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_85 (Length: 401)
Name: NF11737A_low_85
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_85 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 2813729 - 2814100
Alignment:
| Q |
18 |
gacatcactcgtgtctgctttaaatgcttcagaaactccaagaattggatcaggaggagccattggtataccctcaaaccgagaaacattagtcgcaaca |
117 |
Q |
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| T |
2813729 |
gacatcgctcgtgtctgctttaaatgcttcggaaactccaagaattggatcaggaggagccattggtataccctcaaaccgagaaacattagtcgcaaca |
2813828 |
T |
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| Q |
118 |
gccatacagatccgaccagatgactgaataaacaaaatcaacagacaaaagatcagaacagacacaatgaaattgatcagggtagtaggaccacctccta |
217 |
Q |
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| T |
2813829 |
gccatacagatccgaccagatgactgaataaacaaaatcaacagacaaaagatcagaacagacacaatgaaattgatcagggtagtaggaccacctccta |
2813928 |
T |
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| Q |
218 |
aatcctaattaatgaacttcaattgcaattttaaaactatactttgatccattatgaacacaaaaataagaacagagttaacaagttaacatcaggaatt |
317 |
Q |
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| T |
2813929 |
aatcctaattaatcaacttcaattgcaattttaaaactatactttgatccattatgaacacaaaaataagaacagagttaacaagttaacatcaggaatt |
2814028 |
T |
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| Q |
318 |
gaattacagttctaatttcttatttttgtcttaaccctccggtttccagaggaaactggtaatctgatgtcc |
389 |
Q |
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| T |
2814029 |
gaattacagttctaatttcttatttttgtcttaaccctccggtttccagaggaaactggtaatctgatgtcc |
2814100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 61 - 123
Target Start/End: Complemental strand, 26375835 - 26375773
Alignment:
| Q |
61 |
attggatcaggaggagccattggtataccctcaaaccgagaaacattagtcgcaacagccata |
123 |
Q |
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| T |
26375835 |
attggatcaggaggagccatgggtatatcctctaactgagaaacactaatcgcaacagccata |
26375773 |
T |
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