View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11737A_low_88 (Length: 396)
Name: NF11737A_low_88
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_88 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 25 - 383
Target Start/End: Original strand, 24716343 - 24716702
Alignment:
| Q |
25 |
ggtgaggggggtgaatatcaaggctctgaacttggggcagagagtagcctaaaatagacagggcgagattattgattttgacggctctcttctttgaatc |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24716343 |
ggtgaggggggtgaatatcaaggctctgaacttggggcaaagagttgcctaaaatagacagggcgagattattgattttgaccgctctcttctttgaatc |
24716442 |
T |
|
| Q |
125 |
tcgatcnnnnnnn-ttgggggaaagtattttagaaagctcgtggacgatgaaaattggtatttgattctcaaacaaggcaagatcagacaagacatcatc |
223 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24716443 |
tcgctcaaaaaaaattgggggaaagtattttagaaagctcgtggacgatgaaaattggtattcgattctcaaacaaggcaagatcagacaagacatcatc |
24716542 |
T |
|
| Q |
224 |
gttttttagcacttgaggtgcgaaaagacaaggagtaaagttcaattgacttgatagttgagaatcaagttcgagttctttcgtgatgagaagctctagc |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24716543 |
gttttttagcacttgaggtgcgaaaagacaaggagtaaagttcaattgacttgatagttgagaatcaagttcgagttcttttgtgatgagaagctctagc |
24716642 |
T |
|
| Q |
324 |
agaaaacaaccatccactagcataattttcacgagttcgtatacttcaaggctgatgtcc |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24716643 |
agaaaacaaccatccactagcataattttcacgagttcgtatacttcaaggctgatgtcc |
24716702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 25 - 244
Target Start/End: Original strand, 24807627 - 24807846
Alignment:
| Q |
25 |
ggtgaggggggtgaatatcaaggctctgaacttggggcagagagtagcctaaaatagacagggcgagattattgattttgacggctctcttctttgaatc |
124 |
Q |
| |
|
||||||||| | ||| |||||||| |||||||| || |||||||||||||||||| |||||| ||| |||| |||||| |||||||| ||| |||| |
|
|
| T |
24807627 |
ggtgaggggaattaatgtcaaggctttgaacttgagggagagagtagcctaaaatacgcagggcaagactattaattttgttggctctctgcttgaaatc |
24807726 |
T |
|
| Q |
125 |
tcgatcnnnnnnnttgggggaaagtattttagaaagctcgtggacgatgaaaattggtatttgattctcaaacaaggcaagatcagacaagacatcatcg |
224 |
Q |
| |
|
| | | |||| ||||| |||||||||| ||||||||||| |||| |||||||||||||| |||||| | ||||||||||||||||||||| |
|
|
| T |
24807727 |
ttccttaaaaaactgggggaaaagtgttttagaaagggcgtggacgatggaaataggtatttgattctctaacaagacgagatcagacaagacatcatcg |
24807826 |
T |
|
| Q |
225 |
ttttttagcacttgaggtgc |
244 |
Q |
| |
|
|||| ||||||||| |||| |
|
|
| T |
24807827 |
ttttgaagcacttgaagtgc |
24807846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 336
Target Start/End: Original strand, 24799816 - 24799949
Alignment:
| Q |
203 |
aagatcagacaagacatcatcgttttttagcacttgaggtgcgaaaagacaaggagtaaagttcaattgacttgatagttgagaatcaagttcgagttct |
302 |
Q |
| |
|
||||| |||||||| ||||||||||| || |||||||||| || | ||||||| | ||||| | ||||||||||||||| || ||||| | | || |
|
|
| T |
24799816 |
aagataagacaagatatcatcgttttggagaacttgaggtgtaaaggaaaaaggagtgacattcaagtaacttgatagttgagagtcgagttcaaatcct |
24799915 |
T |
|
| Q |
303 |
ttcgtgatgagaagctctagcagaaaacaaccat |
336 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||| |
|
|
| T |
24799916 |
ttcgtgattagaagctctagtagaaaacaaccat |
24799949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 361
Target Start/End: Original strand, 24807894 - 24807954
Alignment:
| Q |
301 |
ctttcgtgatgagaagctctagcagaaaacaaccatccactagcataattttcacgagttc |
361 |
Q |
| |
|
|||| ||||||||||| |||| ||||||||||||||| |||| |||||||||| ||||||| |
|
|
| T |
24807894 |
cttttgtgatgagaagttctaacagaaaacaaccatcaactaccataattttcgcgagttc |
24807954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 350
Target Start/End: Original strand, 24727839 - 24727880
Alignment:
| Q |
309 |
atgagaagctctagcagaaaacaaccatccactagcataatt |
350 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
24727839 |
atgagaagctctaacagaaaacatgcatccactagcataatt |
24727880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 361
Target Start/End: Original strand, 24897365 - 24897414
Alignment:
| Q |
312 |
agaagctctagcagaaaacaaccatccactagcataattttcacgagttc |
361 |
Q |
| |
|
|||||||||| ||||||||||||||| |||| ||||||||| ||||||| |
|
|
| T |
24897365 |
agaagctctaacagaaaacaaccatctactaacataatttttgcgagttc |
24897414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 24536933 - 24536873
Alignment:
| Q |
177 |
attggtatttgattctcaaacaaggcaagatcagacaagacatcatcgttttttagcactt |
237 |
Q |
| |
|
|||||||| |||||||| ||||||| ||||||||||||||||| || | | ||||||||| |
|
|
| T |
24536933 |
attggtatctgattctccaacaaggtgagatcagacaagacatcttcatctcttagcactt |
24536873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 361
Target Start/End: Original strand, 24827686 - 24827738
Alignment:
| Q |
309 |
atgagaagctctagcagaaaacaaccatccactagcataattttcacgagttc |
361 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||| ||||||||| ||||||| |
|
|
| T |
24827686 |
atgagaagctccaacagaaaacatccatccactaacataattttagcgagttc |
24827738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 361
Target Start/End: Original strand, 24835437 - 24835489
Alignment:
| Q |
309 |
atgagaagctctagcagaaaacaaccatccactagcataattttcacgagttc |
361 |
Q |
| |
|
||||||||||||| ||||||||| ||||||| || ||||||||| ||||||| |
|
|
| T |
24835437 |
atgagaagctctaacagaaaacatccatccaataacataattttagcgagttc |
24835489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University