View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_89 (Length: 393)
Name: NF11737A_low_89
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_89 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 48858550 - 48858169
Alignment:
| Q |
1 |
atcatcgggcagttttttaatcttttgccaattataaaacactccactagacacaaacaaaagtccctctccttccccattaattttatgaactgagtta |
100 |
Q |
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| T |
48858550 |
atcatcgggcagttttttaatcttttgccaattataatacactccactagacacaaacaaaagtccctctccttccccattaattttatgaactgagtta |
48858451 |
T |
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| Q |
101 |
ttcagaaaaatcccgcaaatacacgcataacgtaatgtcgatgttgatagaattcagtgtcaaaagaaattagtcactcaccctagctagttaacctcat |
200 |
Q |
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|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48858450 |
ttcagaaaaatcccacaaatacacgcataacataatgtcgatgttgatagaattcagtgtcaaaagaaattagtcactcaccctagctagttaacctcat |
48858351 |
T |
|
| Q |
201 |
ttttccaaactctgaaaggtccaaattgagtgttagaagtatccactaccactctattgagttaaaggacaactatacattaaaaactactagtaaaagg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48858350 |
ttttccaaactctgaaaggtccaaattgagtgttagaagtatccactaccactctattgagttaaaggacaactatacattaaaaactactagtaaaagg |
48858251 |
T |
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| Q |
301 |
tcaatttcttgtcactttttcctaaaaagtacatagcaaaacatgacgaaaaccctttataggtgtagatatgatgtccatc |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
48858250 |
tcaatttcttgtcactttttcctaaaaagtacatagcaaaacatgacgaaaaccctttataggtgtagatatgatttccatc |
48858169 |
T |
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