View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_93 (Length: 388)
Name: NF11737A_low_93
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_93 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 23 - 370
Target Start/End: Original strand, 33102087 - 33102435
Alignment:
| Q |
23 |
atgccatgaactataggttcatcgcagctgatacacttcaaaa-atcatcatgctccttgcacttacaatttggactaatttcacagctaatggtagctt |
121 |
Q |
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| T |
33102087 |
atgccatgaactataggttcatcgcagctgatacacttcaaaaaatcatcatgctccttgcacttacaatttggactaatttcacagctaatggtagctt |
33102186 |
T |
|
| Q |
122 |
agagtggatgatcacaatcttctctctttcaacattacccaacactttggttatggggattccacttctcatagctatgtatggtgaatattccggtacc |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102187 |
agagtggatgatcacaatcttctctctttcaacattacccaacactttggttatgggaattccacttctcatagctatgtatggtgaatattccggtacc |
33102286 |
T |
|
| Q |
222 |
cttatggttcaagttgtggttcttcagtgtatcatttggtacactttgttattgtttctttttgagtatcgtggtgctaagcttctaattatggaacagt |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102287 |
cttatggttcaagttgtggttcttcagtgtatcatttggtacactttgttattgtttctttttgagtatcgtggtgctaagcttctaattatggaacagt |
33102386 |
T |
|
| Q |
322 |
ttcctgaaactgctgcttctattatttcctttaaggttgattctgatgt |
370 |
Q |
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| T |
33102387 |
ttcctgaaactgctgcttctattatttcctttaaggttgattctgatgt |
33102435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 367
Target Start/End: Original strand, 52716573 - 52716718
Alignment:
| Q |
222 |
cttatggttcaagttgtggttcttcagtgtatcatttggtacactttgttattgtttctttttgagtatcgtggtgctaagcttctaattatggaacagt |
321 |
Q |
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| T |
52716573 |
cttatggtacaaattgttgttcttcaaagtgttatttggtacactcttatgttgtttttgtttgaatatagagctgctaaacttcttataacagaacagt |
52716672 |
T |
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| Q |
322 |
ttcctgaaactgctgcttctattatttcctttaaggttgattctga |
367 |
Q |
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| T |
52716673 |
ttcctgaaactgcagcttctataacatcattcaaagttgattctga |
52716718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 120 - 364
Target Start/End: Complemental strand, 10838897 - 10838653
Alignment:
| Q |
120 |
ttagagtggatgatcacaatcttctctctttcaacattacccaacactttggttatggggattccacttctcatagctatgtatggtgaatattccggta |
219 |
Q |
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||||| |||||||| |||||||| || | |||||| | || ||||||||||||||||| ||||| | | || |||||||||||||| ||||| |||| |
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| T |
10838897 |
ttagaatggatgataacaatcttttcattatcaacacttcctaacactttggttatgggaattcctttgttaattgctatgtatggtgattattcaggta |
10838798 |
T |
|
| Q |
220 |
cccttatggttcaagttgtggttcttcagtgtatcatttggtacactttgttattgtttctttttgagtatcgtggtgctaagcttctaattatggaaca |
319 |
Q |
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| | ||||||||||||||||||||||||||||| |||||||||||| | || | |||||||||||||| ||||||||||||||| |||| ||||| || |
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| T |
10838797 |
gcttaatggttcaagttgtggttcttcagtgtattatttggtacactcttttgctttttctttttgagtaccgtggtgctaagcttttaatcatggagca |
10838698 |
T |
|
| Q |
320 |
gtttcctgaaactgctgcttctattatttcctttaaggttgattc |
364 |
Q |
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|||||| ||||| || ||||| || ||||||||||||| ||||| |
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| T |
10838697 |
gtttccagaaaccgcggcttccatcgtttcctttaaggtcgattc |
10838653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 198 - 370
Target Start/End: Original strand, 34971055 - 34971227
Alignment:
| Q |
198 |
atgtatggtgaatattccggtacccttatggttcaagttgtggttcttcagtgtatcatttggtacactttgttattgtttctttttgagtatcgtggtg |
297 |
Q |
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||||||||||| |||| |||||||||||||||||| | || |||||||| |||||||||||||| || ||| | |||||| | ||||||||| | |||| |
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| T |
34971055 |
atgtatggtgatgattctggtacccttatggttcaaatagttgttcttcaatgtatcatttggtatacattgatgttgtttttgtttgagtataggggtg |
34971154 |
T |
|
| Q |
298 |
ctaagcttctaattatggaacagtttcctgaaactgctgcttctattatttcctttaaggttgattctgatgt |
370 |
Q |
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||| | |||| ||| | |||||||||||||| ||||||| ||||||||| || || || |||||||||||||| |
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| T |
34971155 |
ctaggattctcattgttgaacagtttcctgatactgctggttctattatatcattcaaagttgattctgatgt |
34971227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 269
Target Start/End: Original strand, 25038852 - 25038959
Alignment:
| Q |
162 |
aacactttggttatggggattccacttctcatagctatgtatggtgaatattccggtacccttatggttcaagttgtggttcttcagtgtatcatttggt |
261 |
Q |
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||||||||||||||||| ||||| | || | || ||||||||||||| ||| |||| | ||||| ||| |||| |||||||| ||||||||||||| |
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| T |
25038852 |
aacactttggttatgggaattcctttacttaaaggaatgtatggtgaattttcaggtagtttaatggtacaaattgttgttcttcaatgtatcatttggt |
25038951 |
T |
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| Q |
262 |
acactttg |
269 |
Q |
| |
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| |||||| |
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|
| T |
25038952 |
atactttg |
25038959 |
T |
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