View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11737_high_14 (Length: 340)
Name: NF11737_high_14
Description: NF11737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 2 - 335
Target Start/End: Complemental strand, 1843628 - 1843295
Alignment:
| Q |
2 |
gctgtcatatctgatatctccatgtgtgctgctatcaccaggttcataaaggctagatgatgattcatgaagcaagtaccgactctcctctacatttgag |
101 |
Q |
| |
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||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1843628 |
gctgtcatatccgatatctccatgtgtgatgctatcaccaggttcataaatgctagatgatgattcatgaagcaagtacctactctcctctacatttgag |
1843529 |
T |
|
| Q |
102 |
tcatcattgatccaagagtgcttattcattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaac |
201 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1843528 |
tcatctttgatccaagagtgcttattcattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaac |
1843429 |
T |
|
| Q |
202 |
acttcgccgcaagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattattgtttttcaaaca |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
1843428 |
acttcgccgcaagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcttttttcaatca |
1843329 |
T |
|
| Q |
302 |
agatagaaaatgcatagcaagacttcttctctct |
335 |
Q |
| |
|
|||||| |||| ||| |||||||||||||||||| |
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|
| T |
1843328 |
agatagtaaattcattgcaagacttcttctctct |
1843295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 2 - 331
Target Start/End: Complemental strand, 1857639 - 1857310
Alignment:
| Q |
2 |
gctgtcatatctgatatctccatgtgtgctgctatcaccaggttcataaaggctagatgatgattcatgaagcaagtaccgactctcctctacatttgag |
101 |
Q |
| |
|
||||||||||| ||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
1857639 |
gctgtcatatccgatatctccatgtttgttgctatcaccaggttcataaatgctagatgatgattcatgaagcaagtacctactctcctctacatttgag |
1857540 |
T |
|
| Q |
102 |
tcatcattgatccaagagtgcttattcattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaac |
201 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1857539 |
tcatctttgatccaagagtgcttattcattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaac |
1857440 |
T |
|
| Q |
202 |
acttcgccgcaagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattattgtttttcaaaca |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| || |
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|
| T |
1857439 |
acttcgccgcaagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaatacattatcctttttcaagca |
1857340 |
T |
|
| Q |
302 |
agatagaaaatgcatagcaagacttcttct |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1857339 |
agatagaaaatgcatagcaagacttcttct |
1857310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 2 - 331
Target Start/End: Complemental strand, 1869237 - 1868908
Alignment:
| Q |
2 |
gctgtcatatctgatatctccatgtgtgctgctatcaccaggttcataaaggctagatgatgattcatgaagcaagtaccgactctcctctacatttgag |
101 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
1869237 |
gctgtcatatccgatatctccatgtgtgatgctatcaccaggttcataaaagctagatgatgattcatgaagcaagaaccgactctcctctacatttgag |
1869138 |
T |
|
| Q |
102 |
tcatcattgatccaagagtgcttattcattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaac |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1869137 |
tcatcattgatccaagagtgcttattcattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaac |
1869038 |
T |
|
| Q |
202 |
acttcgccgcaagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattattgtttttcaaaca |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| || |
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|
| T |
1869037 |
acttcgccgcaagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaatacattatcttttttcaatca |
1868938 |
T |
|
| Q |
302 |
agatagaaaatgcatagcaagacttcttct |
331 |
Q |
| |
|
|||||| |||||||| |||||||||||||| |
|
|
| T |
1868937 |
agatagtaaatgcattgcaagacttcttct |
1868908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 35 - 335
Target Start/End: Original strand, 1815437 - 1815738
Alignment:
| Q |
35 |
atcaccaggttcataaaggctagatgatgattcatgaagcaagtaccg-actctcctctacatttgagtcatcattgatccaagagtgcttattcattaa |
133 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||| | ||||||||||||||| ||| ||||||||||||||||||||| |||||| |
|
|
| T |
1815437 |
atcaccaaattcataaatgctagatgatgattcatgaagcaagtagtggactctcctctacattaaggtctgcattgatccaagagtgcttatccattaa |
1815536 |
T |
|
| Q |
134 |
cctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctccttgatc |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
1815537 |
cctcattccctccaattccatagccacttccttcatgcttggtctttcctcccctataagtctcaaacagttcgccgcaagaacagccacctccatgatc |
1815636 |
T |
|
| Q |
234 |
tcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattattgtttttcaaacaagatagaaaatgcatagcaagacttcttctct |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||| ||| |||||||||||||||||| |
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|
| T |
1815637 |
acttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagataaaaagtgcgtagcaagacttcttctct |
1815736 |
T |
|
| Q |
334 |
ct |
335 |
Q |
| |
|
|| |
|
|
| T |
1815737 |
ct |
1815738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 128 - 325
Target Start/End: Original strand, 9161353 - 9161550
Alignment:
| Q |
128 |
cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctcc |
227 |
Q |
| |
|
||||||||| || || ||||| ||||| ||||||||||||||||| || ||||| |||||||| |||||||||||| | || ||||||| ||| |||||| |
|
|
| T |
9161353 |
cattaaccttataccatccaactccattgccacttccttcatgctaggcctttcatcccctcttagtctcaaacaccttgctgcaagaatagcaacctcc |
9161452 |
T |
|
| Q |
228 |
ttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattattgtttttcaaacaagatagaaaatgcatagcaagact |
325 |
Q |
| |
|
|| ||||| | |||||||| ||||| | | |||| |||||||| ||||||| | ||| | ||| |||||||| | ||| |||||||||||||| |
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|
| T |
9161453 |
ttaatctcctccttgttttcatcatttaaaataccaacttgaatagcttcaaaaattctatcttgttttaaacaagacaaaaagtgcatagcaagact |
9161550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 128 - 325
Target Start/End: Original strand, 9170179 - 9170376
Alignment:
| Q |
128 |
cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctcc |
227 |
Q |
| |
|
||||||||| || || ||||| ||||| |||||||||||||| | |||||||| |||||||||||||| |||||| | | ||||||| ||| |||||| |
|
|
| T |
9170179 |
cattaaccttatgccatccaactccattgccacttccttcatacaaggtctttcatcccctctaagtcttaaacaccttgaagcaagaatagcaacctcc |
9170278 |
T |
|
| Q |
228 |
ttgatctcttgtttgttttcttcattccacaaa-ccatcttgaataacttcaaacacattattgtttttcaaacaagatagaaaatgcatagcaagact |
325 |
Q |
| |
|
|| ||||||| ||||| || || || |||||| ||| |||||||| ||||||| | |||| | ||| |||||||| | ||| |||||||||||||| |
|
|
| T |
9170279 |
ttaatctctttcttgttatcatcgtt-cacaaatccaacttgaatagcttcaaaaaatttatcttgttttaaacaagacaaaaagtgcatagcaagact |
9170376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 128 - 325
Target Start/End: Original strand, 9199746 - 9199943
Alignment:
| Q |
128 |
cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctcc |
227 |
Q |
| |
|
||||||||| || || ||||| |||||||| |||||| |||| || |||||||| || ||||||||||| |||||| | || ||||||| ||| |||||| |
|
|
| T |
9199746 |
cattaaccttataccatccaactccatagctacttccctcatactaggtctttcatcacctctaagtcttaaacaccttgcagcaagaatagcaacctcc |
9199845 |
T |
|
| Q |
228 |
ttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattattgtttttcaaacaagatagaaaatgcatagcaagact |
325 |
Q |
| |
|
|| ||||||| |||||||| |||| | | | ||| |||||||| | ||||| | |||| | ||| |||||||| | ||| |||||||||||||| |
|
|
| T |
9199846 |
ttaatctctttcttgttttcatcatccaaaattccaacttgaatagcatcaaaaagtttatcttgttttaaacaagacaaaaagtgcatagcaagact |
9199943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 130 - 325
Target Start/End: Complemental strand, 9119097 - 9118902
Alignment:
| Q |
130 |
ttaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctcctt |
229 |
Q |
| |
|
||||||| || || ||||| |||||||| | ||||||||| || |||||||| || |||| ||||||||||||| | || ||||||| ||| |||||||| |
|
|
| T |
9119097 |
ttaaccttataccatccaactccatagctatttccttcatactaggtctttcctctcctcgaagtctcaaacaccttgctgcaagaatagcaacctcctt |
9118998 |
T |
|
| Q |
230 |
gatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattattgtttttcaaacaagatagaaaatgcatagcaagact |
325 |
Q |
| |
|
||||||| ||||| || |||||| | | ||| |||||||| ||||||| | |||| | ||| |||||||| | || |||||||||||||| |
|
|
| T |
9118997 |
aatctcttccttgttatcatcattcaaaattccaacttgaatagcttcaaaaagtttatcttgttttaaacaagacaagaagtgcatagcaagact |
9118902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 306
Target Start/End: Original strand, 9229131 - 9229325
Alignment:
| Q |
112 |
tccaagagtgcttattcattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgc |
211 |
Q |
| |
|
|||||| |||||| | ||||||||| | ||||| | |||||||||||||| |||||||| |||||||| || ||| |||||||||| ||| | || || |
|
|
| T |
9229131 |
tccaagggtgcttctccattaaccttaacccctctagctccatagccacttctttcatgctaggtctttcctcgcctttaagtctcaagcaccttgcagc |
9229230 |
T |
|
| Q |
212 |
aagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattattgtttttcaaacaagata |
306 |
Q |
| |
|
||||| ||| || ||||| ||||| | ||||| || |||||| | | |||| |||||| ||||||| |||||| ||| | | | |||||||||| |
|
|
| T |
9229231 |
aagaatagcaacttccttaatctcctccttgttctcatcattcaaaataccaacttgaagaacttcagacacatgattctctcttaaacaagata |
9229325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 128 - 253
Target Start/End: Original strand, 9218262 - 9218387
Alignment:
| Q |
128 |
cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctcc |
227 |
Q |
| |
|
||||||||| || || ||||| |||||||| |||||| |||| || |||||||| || ||||||||||| |||||| | || ||||||| || |||||| |
|
|
| T |
9218262 |
cattaaccttatgccatccaactccatagctacttccctcatactaggtctttcatcacctctaagtcttaaacaccttgcagcaagaatagaaacctcc |
9218361 |
T |
|
| Q |
228 |
ttgatctcttgtttgttttcttcatt |
253 |
Q |
| |
|
|| ||||||| |||||||| ||||| |
|
|
| T |
9218362 |
ttaatctctttcttgttttcatcatt |
9218387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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