View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737_high_25 (Length: 236)
Name: NF11737_high_25
Description: NF11737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737_high_25 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 55565 - 55330
Alignment:
| Q |
1 |
ttgtgacttttaatggctaatgttatagtacannnnnnnnnnnnggaagaatgaagctgtcctcaaggcttgttctgaaccatcttcttcagcaaattct |
100 |
Q |
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| T |
55565 |
ttgtgacttttaatggctaatgttatagtacattttttatttttggaagaatgaagctgtcctcaaggcttgttctgaaccatcttcttcagcaaattct |
55466 |
T |
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| Q |
101 |
tctgccagtgccaacaatgttacaaagaatgcttaagttgaaggatgtccacctgaaggttcttccatacgtattttaggttcccaattctagattggtt |
200 |
Q |
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| T |
55465 |
tctgccagtgccaacaatgttacaaagaatgcttaagttgaaggatgtccacctgaaggttcttccataggtattttaggttcccaattctagattggtt |
55366 |
T |
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| Q |
201 |
tttgctagacagttgaaaaactgtagaggatgcttc |
236 |
Q |
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| T |
55365 |
tttgctagacagttgaaaaactgtagaggatgcttc |
55330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 33755216 - 33755084
Alignment:
| Q |
45 |
ggaagaatgaagctgtcctcaaggcttgttctgaaccatcttcttcagcaaattcttctgccagtgccaacaatgttacaaagaatgcttaagttgaagg |
144 |
Q |
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||||||||||||||||||||||||||||||| |||||| || ||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
33755216 |
ggaagaatgaagctgtcctcaaggcttgttccgaaccagctccttcagcaagttcttctgccagtgccaacaatgttacaaagagtacttaagttgaagg |
33755117 |
T |
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| Q |
145 |
atgtccacctgaaggttcttccatacgtatttt |
177 |
Q |
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| T |
33755116 |
gtgtccacctgaaggttgttccatcggtatttt |
33755084 |
T |
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