View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737_high_28 (Length: 209)
Name: NF11737_high_28
Description: NF11737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 35280175 - 35280370
Alignment:
| Q |
1 |
agtaactggagagacagaatcaagaggtgccaaatttgtgtcaccaccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgttt |
100 |
Q |
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| T |
35280175 |
agtaacaggagagacagaatcaagaggagccaaatttgtgtcaccgccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgttg |
35280274 |
T |
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| Q |
101 |
gtttcattgtatatgcgatttcggaaaaattgacattctgcttggcctatggtgtgtgcaccagaaaggactgtaaggtctcttaatgttagacct |
196 |
Q |
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| T |
35280275 |
gtttcattgtatatgcgatttcggaaaaattgacattctgcttggcctatggtgtgtgcaccagaaaggactgtaaggtctcttaatgttagacct |
35280370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 35289520 - 35289715
Alignment:
| Q |
1 |
agtaactggagagacagaatcaagaggtgccaaatttgtgtcaccaccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgttt |
100 |
Q |
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| T |
35289520 |
agtaactggagagacagaatcaagaggtgccaaatttatgtcaccaccagaagtaggacaatttgattttcttaaggttgcaaagtttgtgtcaatgttg |
35289619 |
T |
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| Q |
101 |
gtttcattgtatatgcgatttcggaaaaattgacattctgcttggcctatggtgtgtgcaccagaaaggactgtaaggtctcttaatgttagacct |
196 |
Q |
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| T |
35289620 |
gtttcgttgtatatacgagttctgaaaaattgacattctgcttgacctatggtgtgtgcaccagaaaggacagtaaggtcatttaatgttagacct |
35289715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 35307336 - 35307497
Alignment:
| Q |
19 |
atcaagaggtgccaaatttgtgtcaccaccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcga |
118 |
Q |
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| T |
35307336 |
atcaagtggtgctaaattggtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcga |
35307435 |
T |
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| Q |
119 |
tttcggaaaaattgacattctgcttggcctatggtgtgtgcaccagaaaggactgtaaggtc |
180 |
Q |
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| T |
35307436 |
tttctgaaaaattggcactctccttggcctatggtgtgtgcaccagaaagtactgtgaggtc |
35307497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 20 - 180
Target Start/End: Original strand, 35322338 - 35322498
Alignment:
| Q |
20 |
tcaagaggtgccaaatttgtgtcaccaccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgat |
119 |
Q |
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| T |
35322338 |
tcaagaggtgctaaattggtgtcaccaccagaaagaggacaatttaatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgat |
35322437 |
T |
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| Q |
120 |
ttcggaaaaattgacattctgcttggcctatggtgtgtgcaccagaaaggactgtaaggtc |
180 |
Q |
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| T |
35322438 |
ttctgaaaaattggcactctccttggcctatggtgtgtgcaccagaaagtactgtgaggtc |
35322498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 7 - 194
Target Start/End: Original strand, 35275414 - 35275601
Alignment:
| Q |
7 |
tggagagacagaatcaagaggtgccaaatttgtgtcaccaccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttca |
106 |
Q |
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| T |
35275414 |
tggagtgacagaatcaaagggtgctaaattggtgtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttca |
35275513 |
T |
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| Q |
107 |
ttgtatatgcgatttcggaaaaattgacattctgcttggcctatggtgtgtgcaccagaaaggactgtaaggtctcttaatgttagac |
194 |
Q |
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| T |
35275514 |
ttgtgtatgcgatttctgaaaaattgacactcagtttgccctatggtgtgtgcaccagataggactgtaaggtcatttaatgttagac |
35275601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 49 - 174
Target Start/End: Original strand, 35311712 - 35311837
Alignment:
| Q |
49 |
agaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgatttcggaaaaattgacattctgcttggcct |
148 |
Q |
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| T |
35311712 |
agaaaaagaacagttggattttcttaaggttgcgaagtttgtgtcaatgttggtttcattgtatatgcgagttctgaacaatcgacactctccttggcct |
35311811 |
T |
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| Q |
149 |
atggtgtgtgcaccagaaaggactgt |
174 |
Q |
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| T |
35311812 |
atggtgtgtgcaccagaaagtactgt |
35311837 |
T |
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