View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11737_high_7 (Length: 467)
Name: NF11737_high_7
Description: NF11737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 458
Target Start/End: Complemental strand, 8840617 - 8840160
Alignment:
| Q |
18 |
tctacctcaccctagtgtctgccattgcagcatacataggacagaaaatcattgacaagcttgtcaatatctttcaaagagcttccttgattatctttgt |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8840617 |
tctacctcaccctagtgtctaccattgcagcatacataggacagaaaatcattgacaagcttgtcaatatctttcaaagagcttccttgattatctttgt |
8840518 |
T |
|
| Q |
118 |
tttatccttcacaattcttgttagtgcaattgcactaggtgagtaatgcttatatatgttataatgagtcaaattgccatgcttgttttaactatatcaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||| |
|
|
| T |
8840517 |
tttatccttcacaattcttgttagtgcaattgcactaggtaagtaatgcttatatatgttataatgagtcaaattgtcatgtttgatttaactatatcaa |
8840418 |
T |
|
| Q |
218 |
-----------------atattttaaattgtgtatgtcaaatattcttgacattgcgaaaaattgcaatgtggttgcggacgcctccaaaacttgtatag |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8840417 |
gagaatgttatggtcaaatattttaaattgtgcatgtcaaatattcttgacatcgcgaaaaattgcaatgtggttgcggacgcctccaaaacatgtatag |
8840318 |
T |
|
| Q |
301 |
aatttgtttctagacacatgcatgcaattgatgtgactaaaattgtggttgcgatgtgattgcagagacctctaaaaacgtcataataatcgcattgcag |
400 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
8840317 |
aatttgtttctagacacatgcatgctattgatatgactaaaattgtggttgcaatgtgattgcagagacctctaaaaacgtcataataatcgcattgcgg |
8840218 |
T |
|
| Q |
401 |
agaaaaatatgacgattgctaattaatttttacattttaagctttcatttccctatgc |
458 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
8840217 |
agaaaaatatgacgattgctaattagtttttacattttaagctttcatttcactatgc |
8840160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University