View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11737_high_9 (Length: 449)
Name: NF11737_high_9
Description: NF11737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Complemental strand, 43279930 - 43279515
Alignment:
| Q |
18 |
attacttaattcctagctactagctagtataattgttttatttatagaagattccaacacacacagttacaagcacacatggaagagaaaaacaatagca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43279930 |
attacttaattcctagctactagctagtataattgttttatttatagaagattccaacacacacagttacaagcacacatggaagagaaaaacaatagca |
43279831 |
T |
|
| Q |
118 |
actatagtacaaactgtttagttggaagttgaaacaatcactagattgttcaaagtataggagaatacgaggaccccatcccattgtcctaatttaacta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43279830 |
actatagtacaaactgtttagttggaagttgaaacaatcactagattgttcaaagtataggagaatacgaggaccccatcccattgtcctaatttaacta |
43279731 |
T |
|
| Q |
218 |
tacaccaaaatgtatcacgtctatttcataactattgatattttgttaagttgactgggtggaaaatatcaaccgaaatattcacacagacaaaggaaga |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43279730 |
tacaccaaaatgtatcacgtctatttcataactattgatattttgttaagttgactgggtggaaaatatcaaccgaaatattcacacagacaaaggaaga |
43279631 |
T |
|
| Q |
318 |
attttggatttaaactcgggtacaacaaaaaatgaacaaagtattgattctcttagctatcagttcaaagttgttgatatatttacaagttcttgtcacc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43279630 |
attttggatttaaactcgggtacaacaaaaaatgaacaaagtattgcttctcttagctatcagttcaaagttgttgatatatttacaagttcttgtcacc |
43279531 |
T |
|
| Q |
418 |
aaagctcttttttcat |
433 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
43279530 |
aaagctcttttttcat |
43279515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University