View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737_low_10 (Length: 406)
Name: NF11737_low_10
Description: NF11737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 9e-86; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 7 - 312
Target Start/End: Original strand, 51303338 - 51303635
Alignment:
| Q |
7 |
aaaaattgttattgttccatctaatgtacctgttagttgtaacttgtaacagcaaaagcagaaggagaataactaattacaatgctttcaatcgaatttt |
106 |
Q |
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| T |
51303338 |
aaaaattgttatctttccatctgatgtacctgttagttgtaac-------agcaaaagaagaaggagaaaggctgattacaatgctttcaatcaaatttt |
51303430 |
T |
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| Q |
107 |
ttatgttacatgccaggcgatgtaaagaccaagtttcaccaaccaaacacataaggttccgatgttcgccaagaccaccaaactccgacagaaaaagtga |
206 |
Q |
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| T |
51303431 |
t-atgttacaagtcagacgatgtaaagaccaagattcaccacccaaacacataagattctgatgt-cgccaagatcaccaaactccgacagaaaaagtga |
51303528 |
T |
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| Q |
207 |
tagcatgggaacccttagtttcccctttaagccact-gtaagcatcagtagaagagaagaaatcaagattggtgaaacctaagtggtgccataacattgc |
305 |
Q |
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| T |
51303529 |
tagcatgggaacccttagttccccctttaagccactcgtaagcatcaatagaagagaagaattcaggattagtgaaacctaagtggtgccataacatagc |
51303628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 7 - 234
Target Start/End: Original strand, 5204308 - 5204528
Alignment:
| Q |
7 |
aaaaattgttattgtt-ccatctaatgtacctgttagttgtaacttgtaacagcaaaagcagaaggagaataactaattacaatgctttcaatcgaattt |
105 |
Q |
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| T |
5204308 |
aaaaattgttattatttccatctaatgtacctgttagttgtaaa-------agcagaagcagaaggtgaatagttgattacaatgctttcaatcgaattt |
5204400 |
T |
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| Q |
106 |
tttatgttacatgccaggcgatgtaaagaccaagtttcaccaaccaaacacataaggttccgatgttcgccaagaccaccaaactccgacagaaaaagtg |
205 |
Q |
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| T |
5204401 |
ttgatcttacaagccaggcgatgtaaagaccaagtttcaccacccaaacacataaggtttcgatg-tcgccaagaccaccaaactccgacataaaaagtg |
5204499 |
T |
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| Q |
206 |
atagcatgggaacccttagtttccccttt |
234 |
Q |
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| T |
5204500 |
atagcatgggaacccttagttcccccttt |
5204528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 106 - 300
Target Start/End: Complemental strand, 9536347 - 9536153
Alignment:
| Q |
106 |
tttatgttacatgccaggcgatgtaaagaccaagtttcaccaaccaaacacataaggttccgatgttcgccaagaccaccaaactccgacagaaaaagtg |
205 |
Q |
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| T |
9536347 |
tttatgttacaagacaggcgatgcaaagaccaagtttcaccacccatacacataagattttgatg-tcgccaagaccaccaaactccaacagagaaagtg |
9536249 |
T |
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| Q |
206 |
atagcatgggaacccttagtttcccctttaagccact-gtaagcatcagtagaagagaagaaatcaagattggtgaaacctaagtggtgccataac |
300 |
Q |
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| T |
9536248 |
atagcctaagaacccttagctccctttctaagccattcgtaaacatcaatagaagaaaaagaatccgcattagtgaaacctaagtggttccataac |
9536153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 38224225 - 38224149
Alignment:
| Q |
133 |
gaccaagtttcaccaaccaaacacataaggttccgatgttcgccaagaccaccaaactccgacagaaaaagtgatagc |
210 |
Q |
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| T |
38224225 |
gaccaagtttcaccactcaaacacataaaatttcgatgct-gccaagaccaccacactccaacagaaaaagtggtagc |
38224149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 53 - 389
Target Start/End: Original strand, 35061526 - 35061863
Alignment:
| Q |
53 |
taacagcaaaagcagaaggagaataa-ctaattacaatgctttcaatcgaattttttatgttacatgccaggcgatgtaaagaccaagtttcaccaacca |
151 |
Q |
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| T |
35061526 |
taacagtagaagcagaaggaggaaaagcttattacaaagctctcaatagaattttttctgttacaagtctagcgttgtagggaccaagtttcaccaccca |
35061625 |
T |
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| Q |
152 |
aacacataaggttccgatgttcgccaagaccaccaaactccgacagaaaaagtgatagcatgggaacccttagtttcccctttaagccactg-taagcat |
250 |
Q |
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| T |
35061626 |
aacacataagattttgatgc-cgccaagaccaccaaactcccacagaaaaagtgttagcctgagaacccttagctcccctcctaagccaatcataagcat |
35061724 |
T |
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| Q |
251 |
cagtagaagagaagaaatcaagattggtgaaacctaagtggtgccataacattgcggagaaagtaaagtcacgaacacaatgtataaaggtctcatttta |
350 |
Q |
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| T |
35061725 |
ccataaaagagaaaaaatcatgattagtgaaacctaagtggtgccataacaaagtggagaaagtacagtcatgaacacaatggagaaaggtatcgttctg |
35061824 |
T |
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| Q |
351 |
aagaccgcagcgagagcaagtagccgaaggagctaaatt |
389 |
Q |
| |
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| T |
35061825 |
gagacggcaacgagagcaagtagcagaaggagctaaatt |
35061863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 25121573 - 25121634
Alignment:
| Q |
125 |
gatgtaaagaccaagtttcaccaaccaaacacataaggttccgatgttcgccaagaccaccaaac |
189 |
Q |
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| T |
25121573 |
gatgtaaagaccaagtttcaccactcaaacacat--gattccgatg-acgccaagaccaccaaac |
25121634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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