View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737_low_15 (Length: 335)
Name: NF11737_low_15
Description: NF11737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737_low_15 |
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| [»] scaffold1515 (1 HSPs) |
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| [»] scaffold1889 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 67 - 329
Target Start/End: Original strand, 14408477 - 14408739
Alignment:
| Q |
67 |
gaatgaaactcgaaatacaaaccatcacgagcgttggagtagttaacatagccatatccaagagatgactgcgtcatctgatctctgcaaaccctaacag |
166 |
Q |
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| T |
14408477 |
gaatgaaactcgaaatacaaaccatcacgagcgttggagtagttaacatagccataaccaagagatgactgcgtcatctgatctctgcaaaccctaacag |
14408576 |
T |
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| Q |
167 |
aaatcacaggggcaatctggctgaacagatcatacagctgcgcatcatttacgttcccttgaagatcaccgacgtacaaagaagaattctcaaatcttcc |
266 |
Q |
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| T |
14408577 |
aaatcacaggggcaatctggctgaacagatcatacagctgcgcatcatttacgttcccttgaagatcaccgacgtacaaagaagaattctcaaatcttcc |
14408676 |
T |
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| Q |
267 |
agcactggtcaaagctgctggaacaacgatcgttggagatgaaattattgctgcctttgcttc |
329 |
Q |
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| T |
14408677 |
agcactggtcaaagctgctggaacaacgatctttggtgatgaaactattgctgccattgcttc |
14408739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1515 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold1515
Description:
Target: scaffold1515; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 126 - 329
Target Start/End: Original strand, 1 - 204
Alignment:
| Q |
126 |
aagagatgactgcgtcatctgatctctgcaaaccctaacagaaatcacaggggcaatctggctgaacagatcatacagctgcgcatcatttacgttccct |
225 |
Q |
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| T |
1 |
aagagatgactgcgtcatctgatcccggcaaaccctagcagaaagcactggtgcaatctgactgaacagatcataaagctggccctcattgacgttcctt |
100 |
T |
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| Q |
226 |
tgaagatcaccgacgtacaaagaagaattctcaaatcttccagcactggtcaaagctgctggaacaacgatcgttggagatgaaattattgctgcctttg |
325 |
Q |
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| T |
101 |
tcgagatcaccaacgtataaggaagcggtctcaaatcttccagtaccggtcaaagctgctggaacaacgatctttggtgatgaaaccactgctgccattg |
200 |
T |
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| Q |
326 |
cttc |
329 |
Q |
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|||| |
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| T |
201 |
cttc |
204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1889 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold1889
Description:
Target: scaffold1889; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 260
Target Start/End: Complemental strand, 1019 - 845
Alignment:
| Q |
86 |
aaccatcacgagcgttggagtagttaacatagccatatccaagagatgactgcgtcatctgatctctgcaaaccctaacagaaatcacaggggcaatctg |
185 |
Q |
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|||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||| || |||||||| || ||||| || || ||||||| |
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| T |
1019 |
aaccatcacgagcgttggagaagttgacatagccataaccaagagatgactgcgtcatctgatccctacaaaccctgacggaaataacgtggccaatctg |
920 |
T |
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| Q |
186 |
gctgaacagatcatacagctgcgcatcatttacgttcccttgaagatcaccgacgtacaaagaagaattctcaaa |
260 |
Q |
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| T |
919 |
atagagaggttcataaagctgggcctcattcaccttcctttcaagatcaccaacgtacaatgaagcattctcaaa |
845 |
T |
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