View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737_low_2 (Length: 553)
Name: NF11737_low_2
Description: NF11737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 10598103 - 10597666
Alignment:
| Q |
1 |
tagccgtgtcttcatcgagcactctgactgggagttcttcaatgaatacctcgttttcagcatgtacttcactttgtacatttccagatgtattagtccc |
100 |
Q |
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| T |
10598103 |
tagccgtctcttcatcgagcactccgactgggagttcttcaatgaatacctcgttttcagcatgtacttcactttgtacatttccagatgtattagtccc |
10598004 |
T |
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| Q |
101 |
ttcaaatgtagccgtgtcatcatcaagcactccgactggaagctccttcaatgcatgcatatcagaatctaacccttcacttgcagaattgtcactgata |
200 |
Q |
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|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10598003 |
ttcaaatgtagccgtgtcttcatcaagcactccaactggaagctccttcaatgcatgcatatcagaatctaacccttcacttgcagaattgtcactgata |
10597904 |
T |
|
| Q |
201 |
tcatcattgttagctcccacaggtgattctttcaaagcagtcgtatcaagtttatcaaccacaataggaatgtcactgacctctgattttgatttgcatt |
300 |
Q |
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| T |
10597903 |
ttatcatcgttagctcccacaggtgagtctttcaaagcagtggtatcaagtttatcaaccacaataggaatgtcgatgacctctgactttgatttgcatt |
10597804 |
T |
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| Q |
301 |
ctgaatccgttttgtcagaaaaattacttgtggaatccaatgcatcagcagcaattacaggactataatcttcgttgattaatccatttggtagcattgt |
400 |
Q |
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| T |
10597803 |
ccaaatccgttttgtcaacaagatcacttgtggaatccgatgcatcagcagccattacaggactgctatcctcattgattaatccatttggtagcattgt |
10597704 |
T |
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| Q |
401 |
agtctttgctctctcacttgatgcagaatcaacatgcg |
438 |
Q |
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| T |
10597703 |
ggtctttgttctctcacttaatgcagaatcaacatgcg |
10597666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 404 - 542
Target Start/End: Complemental strand, 10597664 - 10597526
Alignment:
| Q |
404 |
ctttgctctctcacttgatgcagaatcaacatgcgaccgagattcacttccaccatcatcatccttcatacagaaatattccttgggacttccattacca |
503 |
Q |
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| T |
10597664 |
ctttgttctctcacttgatgcagaatcaacatgcgaccgagattcacttctaccatcatcatccttcatacagaactgttccttgggacttccatcacta |
10597565 |
T |
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| Q |
504 |
gtaccttcagatgaatctttttctgatgccactttctct |
542 |
Q |
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| T |
10597564 |
gtaccttcagatgaatctttttctgatgccactttctct |
10597526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 10598202 - 10598132
Alignment:
| Q |
1 |
tagccgtgtcttcatcgagcactctgactgggagttcttcaatgaatacctcgttttcagcatgtacttca |
71 |
Q |
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| T |
10598202 |
tagctgtgtcttcatcgagcactccgactggaagttcttcaatgaatacctcatttccggcttgtacttca |
10598132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 142
Target Start/End: Complemental strand, 10598272 - 10598169
Alignment:
| Q |
30 |
gggagttcttcaatgaatacctcgttttcagcatgtacttcactttgtacatttccagatgtattagtcccttcaaatgtagccgtgtcatcatcaagca |
129 |
Q |
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|||||||||| |||||||||||| ||| |||| ||||||||| ||| |||| ||||||||| ||||| ||||||| ||||| ||||| |||| |
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| T |
10598272 |
gggagttctttaatgaatacctcatttccagcttgtacttcatttt---------cagaggtattagtctcttcagatgtagctgtgtcttcatcgagca |
10598182 |
T |
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| Q |
130 |
ctccgactggaag |
142 |
Q |
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| T |
10598181 |
ctccgactggaag |
10598169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 53388732 - 53388427
Alignment:
| Q |
1 |
tagccgtgtcttcatcgagcactctgactgggagttcttcaatgaatacctcgttttcagcatgtacttcactttgtacatttccagatgtattagtccc |
100 |
Q |
| |
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||||| |||||||||||| |||| || || ||||||||||||||||||||||||||| || |||||||||| |||||||| |||||||||||||| | |
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| T |
53388732 |
tagccttgtcttcatcgattactccaacgggaagttcttcaatgaatacctcgttttcatcacttacttcacttagtacattttcagatgtattagtctc |
53388633 |
T |
|
| Q |
101 |
ttcaaatgtagccgtgtcatcatcaagcactccgactggaagctccttcaatgcatgcatatcagaatctaacccttcacttgcagaattgtcactgata |
200 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||| |
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| T |
53388632 |
ttcaaatgtagccgtgtattcatcgagcactccgactggaagctcctacaatgcatgcatatcagaatctaacccttcacttgaagaatcatcactaata |
53388533 |
T |
|
| Q |
201 |
tcatcattgttagctcccacaggtgattctttcaaagcagtcgtatcaagtttatcaaccacaataggaatgtcactgacctctgattttgatttgcatt |
300 |
Q |
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||||||||||| |||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
53388532 |
tcatcattgtttgctcccacgggtaattctttcaaagcagtcgtatcaaatttatcaaccacaataggaatgtcgctgacctctgattttgatttgcatt |
53388433 |
T |
|
| Q |
301 |
ctgaat |
306 |
Q |
| |
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|||||| |
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| T |
53388432 |
ctgaat |
53388427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 354 - 542
Target Start/End: Complemental strand, 53388425 - 53388237
Alignment:
| Q |
354 |
attacaggactataatcttcgttgattaatccatttggtagcattgtagtctttgctctctcacttgatgcagaatcaacatgcgaccgagattcacttc |
453 |
Q |
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|||||||||||| |||| || ||||||||||||| |||||||||||||| ||||| |||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
53388425 |
attacaggactacaatcctcattgattaatccatctggtagcattgtaggctttgttctctcacttgacgtagaatcaacatgcgaccgagattcacttc |
53388326 |
T |
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| Q |
454 |
caccatcatcatccttcatacagaaatattccttgggacttccattaccagtaccttcagatgaatctttttctgatgccactttctct |
542 |
Q |
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| T |
53388325 |
caccgtcatcatccttcatacataattgttccttgggacttccctcactaataccttcagatgaatctttttctgatgccactttctct |
53388237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 53388826 - 53388761
Alignment:
| Q |
6 |
gtgtcttcatcgagcactctgactgggagttcttcaatgaatacctcgttttcagcatgtacttca |
71 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||| ||| | || ||||||||| |
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| T |
53388826 |
gtgtcttcatcgagcactccaactgggagttcttcaatgaatacctcatttccggcttgtacttca |
53388761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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