View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737_low_20 (Length: 271)
Name: NF11737_low_20
Description: NF11737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 8e-70; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 760771 - 760936
Alignment:
| Q |
18 |
ggtagaatagatgaagcagttagtgcgtatcgtgatattgttgtgaagcatcct-atagtgatttccaccttgataatcagatccctattatgataatga |
116 |
Q |
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| T |
760771 |
ggtagaatggatgaagcagttagtgcgtatcgtgatattgttatgaagcatcctcatagtgatgttcaccttgataatcaaatccctattatgataatga |
760870 |
T |
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| Q |
117 |
ctgagcttataaattctggtatgaatgacaaggctgccactgtttttaccttagccaatgaatctc |
182 |
Q |
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| T |
760871 |
ctgagcttataaattctggtatgaatgacaaggctgccactgtttttaccttagccaatggatctc |
760936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 704639 - 704534
Alignment:
| Q |
18 |
ggtagaatagatgaagcagttagtgcgtatc-gtgatattgttgtgaagcatcct-atagtgatttccaccttgataatcagatccctattatgataatg |
115 |
Q |
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| T |
704639 |
ggtagaatggatgaagcagttagtgcgtatttgtgatattgttatgaagcatcctcatagtgatgttcaccttgataatcaaatccctattatgataatg |
704540 |
T |
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| Q |
116 |
actgag |
121 |
Q |
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|||||| |
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| T |
704539 |
actgag |
704534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 162
Target Start/End: Complemental strand, 1409009 - 1408955
Alignment:
| Q |
108 |
tgataatgactgagcttataaattctggtatgaatgacaaggctgccactgtttt |
162 |
Q |
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| T |
1409009 |
tgataatgactgagcttataaattctggtatgactgatgaggctgtcactgtttt |
1408955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 1409081 - 1409027
Alignment:
| Q |
17 |
aggtagaatagatgaagcagttagtgcgtatcgtgatattgttgtgaagcatcct |
71 |
Q |
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| T |
1409081 |
aggtagaatcgatgaagcagttagtgcgtatcatgatgttgttatgaagtatcct |
1409027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 5934916 - 5935016
Alignment:
| Q |
18 |
ggtagaatagatgaagcagttagtgcgtatcgtgatattgttgtgaagcatcct-atagtgatttccaccttgataatcagatccctattatgataatga |
116 |
Q |
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|||||||| |||||||||||||||| ||| || ||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
5934916 |
ggtagaatggatgaagcagttagtgtctatattgctattgttgtgaagcatcctgatagtgatttccaccttgataatcacatcccttttatgataatga |
5935015 |
T |
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| Q |
117 |
c |
117 |
Q |
| |
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| |
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|
| T |
5935016 |
c |
5935016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 43566750 - 43566687
Alignment:
| Q |
17 |
aggtagaatagatgaagcagttagtgcgtatcgtgatattgttgtgaagcatcct-atagtgat |
79 |
Q |
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||||||||| ||||| |||||||||| || ||||| ||||||| ||||||||||| |||||||| |
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| T |
43566750 |
aggtagaatggatgaggcagttagtgtgtgtcgtgctattgttatgaagcatcctcatagtgat |
43566687 |
T |
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