View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737_low_21 (Length: 250)
Name: NF11737_low_21
Description: NF11737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737_low_21 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 9523567 - 9523328
Alignment:
| Q |
11 |
gacatcaaaggaaaacatttgaaagtaatggttactgaccatgaccctgtaatcatgattgcttttgtggggtgtcagctcagctccaacagaaaagcac |
110 |
Q |
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| T |
9523567 |
gacatcaaaggaaaacatttgaaagtaatggttactgaccatgaccctgtaatcatgattgcttttgtggggtgtcagctcagctccaacagaaaagcac |
9523468 |
T |
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| Q |
111 |
tcaacacataggtcaaaattggggcacacggcacacttaatacggattactccagtaatatctttcttacagtaattgcaatgatacagagcccattttg |
210 |
Q |
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| T |
9523467 |
tcaacacataagtcaaaatcggggcacacggcacacttaatacggattactccggtaatatttttcttacagtaattgcaatgatacagagcccattttg |
9523368 |
T |
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| Q |
211 |
cttcacctgctccttgacctatctcacaaaattattttca |
250 |
Q |
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| T |
9523367 |
cttcacctgctccttgacctatctcacaaaattattttca |
9523328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 9495757 - 9495531
Alignment:
| Q |
11 |
gacatcaaaggaaaacatttgaaagtaatggtta-------ctgaccatgaccctgtaatcatgattgcttttgtggggtgtcagctcagctccaacaga |
103 |
Q |
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| T |
9495757 |
gacatcaaaggaaaacatttgaaagtaatggttagtggttactgaccatgaccctgtaattatgattgcttttgtggggtgtcacctcagctccaacaga |
9495658 |
T |
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| Q |
104 |
aaagcactcaacacataggtcaaaattggggcacacggcacacttaatacggattactccagtaatatctttcttacagtaattgcaatgatacagagcc |
203 |
Q |
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| T |
9495657 |
aaagcactcaatacataagtcaaaatctgggcacttggcacacttgatacggatttttcctgtaatatctttattacagtaattgcaatgatacaaagcc |
9495558 |
T |
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| Q |
204 |
cattttgcttcacctgctccttgacct |
230 |
Q |
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| T |
9495557 |
cttttcgcttcacctgctccttgacct |
9495531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 23045714 - 23045938
Alignment:
| Q |
18 |
aaggaaaacatttgaaagtaatggttactgaccatgaccctgtaatcatgattgcttttgtggggtgtcagctcagctccaacagaaaagcactcaacac |
117 |
Q |
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| T |
23045714 |
aaggaaaatatttgaaagtaatggttactgaccatgaccctgtaagcatgattgcttttgtggggtgtcagctcagctccaaccgaaaagcactcaacac |
23045813 |
T |
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| Q |
118 |
ataggtcaaaattggggcacacggcacacttaatacggattactccagtaatatctttcttacagtaattgcaatgatacagagcccattttgcttcacc |
217 |
Q |
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| T |
23045814 |
ataagtcgaaatctgagcacacgacacacttaatccggatttttcctgtaatatcgaaattacagtaattgcaatgatacaaatgcctttttgcttcccc |
23045913 |
T |
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| Q |
218 |
tgctccttgacctatctcacaaaat |
242 |
Q |
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| T |
23045914 |
agctccttgacctgactcacaaaat |
23045938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 58 - 242
Target Start/End: Original strand, 22513524 - 22513708
Alignment:
| Q |
58 |
tgtaatcatgattgcttttgtggggtgtcagctcagctccaacagaaaagcactcaacacataggtcaaaattggggcacacggcacacttaatacggat |
157 |
Q |
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| T |
22513524 |
tgtaagcatgattgcttttgtggggtgtcagctcagctccaacagaaaagcactcaacacataagtcaaaatctgggcacacggcacacttaatccggat |
22513623 |
T |
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| Q |
158 |
tactccagtaatatctttcttacagtaattgcaatgatacagagcccattttgcttcacctgctccttgacctatctcacaaaat |
242 |
Q |
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| T |
22513624 |
ttgtcctgtaagatcgttattacaataatggcaatgatacagagcccttttcgcttcacccgctccttgacatgactcacaaaat |
22513708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 50 - 230
Target Start/End: Complemental strand, 22513515 - 22513335
Alignment:
| Q |
50 |
catgaccctgtaatcatgattgcttttgtggggtgtcagctcagctccaacagaaaagcactcaacacataggtcaaaattggggcacacggcacactta |
149 |
Q |
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| T |
22513515 |
catgaccctataagcatgattgcttttgtggggtgtcacctcagttccaacagaaaagcactcaacacataagtcaaaatctgggcacacgacacactta |
22513416 |
T |
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| Q |
150 |
atacggattactccagtaatatctttcttacagtaattgcaatgatacagagcccattttgcttcacctgctccttgacct |
230 |
Q |
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| T |
22513415 |
atccggatttgtcttgcaagatctttattacaataattgcaatgatacagagccctttttgcttcacccgctccttgacct |
22513335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 36861225 - 36861181
Alignment:
| Q |
65 |
atgattgcttttgtggggtgtcagctcagctccaacagaaaagca |
109 |
Q |
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| T |
36861225 |
atgattgcttttatgaggtgtcacctcagcaccaacagaaaagca |
36861181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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