View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11737_low_26 (Length: 229)
Name: NF11737_low_26
Description: NF11737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737_low_26 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 9652600 - 9652822
Alignment:
| Q |
7 |
cttatgccttcaaacatttgagagcaccctgtcatcagacggtgcttgatacatgtcatttgttgttcagttttcaagcatgttaccatggagttatgcc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9652600 |
cttatgccttcaaacatttgagagcaccctgtcatcagacggtgcttgatacatgtcatttgttgttcagttttcaagcatgttaccacggagttatgcc |
9652699 |
T |
|
| Q |
107 |
aaagaaattttgatatttgtttgtgctaagttttgtaatatttgagttgaacgttttcggatggtggtggaagataagctgagattttatcattatttat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9652700 |
aaagaaattttgatatttgtttgtgctaagttttgtaatatttgagttgaacgttttcggatggtggtggaagataagctgagattttatcattatttat |
9652799 |
T |
|
| Q |
207 |
gcaaaactttgattgcattatgc |
229 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
9652800 |
gcaaaactttgattgcattatgc |
9652822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 34734341 - 34734241
Alignment:
| Q |
127 |
ttgtgctaagttttgtaatatttgagttgaacgttttcggatggtggtggaagataagctgagattttatcattatttatgcaaaactttgattgcatta |
226 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||| |||||||||||||| ||| ||||||| |||||||||||||||| |||||||| ||| |||| |
|
|
| T |
34734341 |
ttgtgctaagttttgtaatatttgagtcgagtgttttgagatggtggtggaagctaaactgagatattatcattatttatgc-aaactttgcttgtatta |
34734243 |
T |
|
| Q |
227 |
tg |
228 |
Q |
| |
|
|| |
|
|
| T |
34734242 |
tg |
34734241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University