View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737_low_3 (Length: 514)
Name: NF11737_low_3
Description: NF11737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 112 - 499
Target Start/End: Complemental strand, 32812904 - 32812517
Alignment:
| Q |
112 |
aggaggaagagccacaataatatttaccccatcatcaccaccttcacctccgtgaaaagaagggaacaatagtataatatccttcttatgataaactact |
211 |
Q |
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| T |
32812904 |
aggaggaagagccacaataatatttaccccatcatcaccaccttcaactccgtgaaaagaagggaacaatagtataatatccttcttatgataaaccact |
32812805 |
T |
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| Q |
212 |
ggacaacaatacttaggcttcccccatggatactccacctcttcaaaccctaacctccaccatgaagacaccaaaagctctccattcggaaaaccattat |
311 |
Q |
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| T |
32812804 |
ggacaacaatacttaggcttcccccatggatactccacctcttcaaaccctaacctccaccatgaagacaccaaaagctctccattcggaaaaccattat |
32812705 |
T |
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| Q |
312 |
acaattctccccaatcaataatagaccttgcatactcatcacccattctttttgtaccctcccacaccatctccaccaaccttgagaattcaccttcctt |
411 |
Q |
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| T |
32812704 |
acaattctccccaatcaataatagaccttgcatactcatcacccattctttttgtaccctcccacaccatctccaccaaccttgagaattcaccttcctt |
32812605 |
T |
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| Q |
412 |
caattcctcacactttgccgaagcgtacgccgttaaaactgcattcccagcgtactctctcggcaatggaggattcaatcttgaacgt |
499 |
Q |
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| T |
32812604 |
caattcctcacactttgccgaagcttacgccgttaaaactgcattcccagcgtactctctcggcaatggaggattcaatcttgaacgt |
32812517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 60 - 499
Target Start/End: Complemental strand, 32830486 - 32830047
Alignment:
| Q |
60 |
tagatcaaatcaagaacatgtaaaataggcccttaaagttttgcatttccttaggaggaagagccacaataatatttaccccatcatcaccaccttcacc |
159 |
Q |
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| T |
32830486 |
tagattaaatcaaaaaagtgtaaaataaactcttaaatttttccatttcatctcgaggaagagccactataatatttactccgtcaccaccaccttcacc |
32830387 |
T |
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| Q |
160 |
tccgtgaaaagaagggaacaatagtataatatccttcttatgataaactactggacaacaatacttaggcttcccccatggatactccacctcttcaaac |
259 |
Q |
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| T |
32830386 |
tccattaaaagaaggaaataatagtataatatccttcctatgataaaccacaggacaacaatacttaggcttcccccatggatactccacctcttcaaac |
32830287 |
T |
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| Q |
260 |
cctaacctccaccatgaagacaccaaaagctctccattcggaaaaccattatacaattctccccaatcaataatagaccttgcatactcatcacccattc |
359 |
Q |
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| T |
32830286 |
cctagcctccaccatgaagacaccaaaacatccccatttggaaaaccattatacaactctccccaatcaataatagatcttgcatattcatcactcattc |
32830187 |
T |
|
| Q |
360 |
tttttgtaccctcccacaccatctccaccaaccttgagaattcaccttccttcaattcctcacactttgccgaagcgtacgccgttaaaactgcattccc |
459 |
Q |
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| T |
32830186 |
ttcttgaaccctcttccaccatctccaccaaccttgaaaattcaccttccttcaattcctcacactttgccgaagcgtacgctgttaatactgcattccc |
32830087 |
T |
|
| Q |
460 |
agcgtactctctcggcaatggaggattcaatcttgaacgt |
499 |
Q |
| |
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|| |||| |||||||||||||||||||||||||||||||| |
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| T |
32830086 |
agtgtacgctctcggcaatggaggattcaatcttgaacgt |
32830047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 32813570 - 32813457
Alignment:
| Q |
1 |
aaattaaatgtctgaattcttgtgtccaaccaaaaattattcattttcgggcatctatatagatcaaatcaagaacatgtaaaataggcccttaaagttt |
100 |
Q |
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| T |
32813570 |
aaattaaatgtttgaattcttgtgtccaactaaaaattattcgttttcgggcatctatatagatcaaatcaagaacctgtaaaataggcccttaaagttt |
32813471 |
T |
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| Q |
101 |
tgcatttccttagg |
114 |
Q |
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| T |
32813470 |
tgcatttctttagg |
32813457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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