View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737_low_30 (Length: 202)
Name: NF11737_low_30
Description: NF11737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 7e-88; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 35280199 - 35280012
Alignment:
| Q |
1 |
tcttgattctgtctctccagttacttttgacaataattactatagggaccttgttgctaataaaggacttcttcattctgatcaagcacttttcaatggt |
100 |
Q |
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| T |
35280199 |
tcttgattctgtctctcctgttacttttgacaacaattattatagggatctagttgctaataaaggacttcttaattctgatcaagcacttttcaatggt |
35280100 |
T |
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| Q |
101 |
gttggttctccagtttctttggttagggcttatagtataaatggttttgcttttagaagagactttgcttttgctatggtgaagatga |
188 |
Q |
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| T |
35280099 |
gttggttctccagtttctttggttagggcttatagtataaatggttttgcttttagaagagactttgcttttgctatggtgaagatga |
35280012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 35289544 - 35289357
Alignment:
| Q |
1 |
tcttgattctgtctctccagttacttttgacaataattactatagggaccttgttgctaataaaggacttcttcattctgatcaagcacttttcaatggt |
100 |
Q |
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| T |
35289544 |
tcttgattctgtctctccagttacttttgacaacaattactataatgaccttgttgctaataaaggacttcttcattctgatcaagctcttttcaatggt |
35289445 |
T |
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| Q |
101 |
gttggttctccagtttctttggttagggcttatagtataaatggttttgcttttagaagagactttgcttttgctatggtgaagatga |
188 |
Q |
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| T |
35289444 |
gttggttctcaagtttctttggttaggacttatagtagaaataatattgcttttaaaagagactttgcagctgctatggtgaagatga |
35289357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 3 - 188
Target Start/End: Complemental strand, 35275430 - 35275245
Alignment:
| Q |
3 |
ttgattctgtctctccagttacttttgacaataattactatagggaccttgttgctaataaaggacttcttcattctgatcaagcacttttcaatggtgt |
102 |
Q |
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| T |
35275430 |
ttgattctgtcactccaactaaatttgacaacaattattataaggaccttattgctaataaaggtcttctacattctgatcaagttcttttcaatggtgg |
35275331 |
T |
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| Q |
103 |
tggttctccagtttctttggttagggcttatagtataaatggttttgcttttagaagagactttgcttttgctatggtgaagatga |
188 |
Q |
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| T |
35275330 |
tggttctcaaatttctttggttaggaagtatagtagagatggtgctgctttttctagagactttgctgctgctatggtgaagatga |
35275245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 183
Target Start/End: Complemental strand, 35322319 - 35322164
Alignment:
| Q |
25 |
ttttgacaataattactatagggaccttgttgctaataaaggacttcttcattctgatcaagcacttttcaatggtgttggttctccagtttctttggtt |
124 |
Q |
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| T |
35322319 |
ttttgacaacaattactataaaaatcttgttgcaagcaaaggtcttttccattctgatcaagctcttttcaataatg---ggtctcaagataatttggtt |
35322223 |
T |
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| Q |
125 |
agggcttatagtataaatggttttgcttttagaagagactttgcttttgctatggtgaa |
183 |
Q |
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| T |
35322222 |
aggagttatagtaccaatggtgctacttttagaagagactttgctgttgctatggtgaa |
35322164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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