View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737_low_4 (Length: 484)
Name: NF11737_low_4
Description: NF11737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 24 - 478
Target Start/End: Original strand, 929795 - 930250
Alignment:
| Q |
24 |
tctaacacatctttgatcaggggtgtcgatgctaccgagtttgttgatactcttcaataatcatcttgattatatcgattatttctttattttatgatca |
123 |
Q |
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| T |
929795 |
tctaacacgtctttgatcaggggtgtcgatgctaccgagtttgttgatactcttcaataatcatcttgattatatcgattatttctttattttatgatca |
929894 |
T |
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| Q |
124 |
tctccaaatcatgttgtattagttgttgttaatgatgttcattgttgatattaattgtgaatgttaattgtgattaactatagatatgctatttttcatc |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
929895 |
tctccaaatcatgttgtattagttgttgttaatgatgttcattgttgatattaattgtgaatgttaattgtgattaactatagatatgctatttttcatc |
929994 |
T |
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| Q |
224 |
agttttggaagtgttgaaatacatgattccactgtatagtatataccatgattatatatcaatggcgtgttttacttatcttttattc-nnnnnnnnnnn |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
929995 |
agttttggaagtgttgaaatacatgattccactgtatagtatataccatgattatatatcaatggcgtgttttactaatcttttattcaaaaaacaaaaa |
930094 |
T |
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| Q |
323 |
nnnttggttatcctaagtcaattatattggtgtatcctacaccttagacttgctttttgttgttgatttctagtttaacactttttgactgttatagtac |
422 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
930095 |
aaattggttatcctgagtcaattatattggtgtatcctacaccttagacttgctttttgttgttgatttctagtttaacactttttgactgttatagtac |
930194 |
T |
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| Q |
423 |
gtactgttctgccacggtcttgcttgcaccacgactactttcaagtttcatctcac |
478 |
Q |
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| T |
930195 |
gtactgttctgccacggtcttgcttgcaccacaactactttcaagtttcatctcac |
930250 |
T |
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