View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11738_high_11 (Length: 249)

Name: NF11738_high_11
Description: NF11738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11738_high_11
NF11738_high_11
[»] chr4 (3 HSPs)
chr4 (115-172)||(29298553-29298610)
chr4 (22-51)||(53611241-53611270)
chr4 (185-242)||(53611370-53611429)
[»] chr6 (2 HSPs)
chr6 (181-237)||(34486393-34486451)
chr6 (181-242)||(34391107-34391171)
[»] chr2 (1 HSPs)
chr2 (22-51)||(28027966-28027995)
[»] chr1 (1 HSPs)
chr1 (22-51)||(31477967-31477996)


Alignment Details
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 29298610 - 29298553
Alignment:
Q  115 tgtacagcaagtaactcaacttagtctataagtaattgttttttattcagttgatata 172  Q
    |||| ||||||||||||||||||| ||||||||| ||||||| |||||| ||||||||    
T  29298610 tgtagagcaagtaactcaacttagcctataagtacttgttttgtattcaattgatata 29298553  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 51
Target Start/End: Original strand, 53611241 - 53611270
Alignment:
Q  22 tgttagttagttgtggataaatccaactat 51  Q
    ||||||||||||||||||||||||||||||    
T  53611241 tgttagttagttgtggataaatccaactat 53611270  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 53611370 - 53611429
Alignment:
Q  185 cactcatatctctcacatttaacaata--gagtttcatcattcctttgtagtttcatctc 242  Q
    ||||||||||||||| ||| || ||||  |||||| ||||||||||||||||||| ||||    
T  53611370 cactcatatctctcaaattcaataataaagagttttatcattcctttgtagtttcctctc 53611429  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 34486451 - 34486393
Alignment:
Q  181 atatcactcatatctctcacatttaacaat--agagtttcatcattcctttgtagtttc 237  Q
    |||||||||||||||||||||||||| |||  ||||||| ||||||| |||||||||||    
T  34486451 atatcactcatatctctcacatttaataataaagagttttatcattcttttgtagtttc 34486393  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 34391107 - 34391171
Alignment:
Q  181 atatcactcatatctctcacatttaacaatagag---tttcatcattcctttgtagtttcatctc 242  Q
    ||||||||||||||||||||||| || |||| ||   ||| ||||||||||||||||||| ||||    
T  34391107 atatcactcatatctctcacattcaataataaagtgtttttatcattcctttgtagtttcctctc 34391171  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 51
Target Start/End: Original strand, 28027966 - 28027995
Alignment:
Q  22 tgttagttagttgtggataaatccaactat 51  Q
    ||||||||||||||||||||||||||||||    
T  28027966 tgttagttagttgtggataaatccaactat 28027995  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 51
Target Start/End: Original strand, 31477967 - 31477996
Alignment:
Q  22 tgttagttagttgtggataaatccaactat 51  Q
    ||||||||||||||||||||||||||||||    
T  31477967 tgttagttagttgtggataaatccaactat 31477996  T

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