View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11738_high_5 (Length: 428)

Name: NF11738_high_5
Description: NF11738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11738_high_5
NF11738_high_5
[»] chr2 (67 HSPs)
chr2 (1-420)||(39192477-39192896)
chr2 (1-420)||(39198157-39198576)
chr2 (69-266)||(39222269-39222466)
chr2 (69-224)||(39390502-39390657)
chr2 (69-220)||(39390292-39390443)
chr2 (63-224)||(39221681-39221842)
chr2 (71-205)||(39451731-39451865)
chr2 (1-138)||(39222754-39222891)
chr2 (71-295)||(39222114-39222338)
chr2 (117-326)||(39136774-39136983)
chr2 (71-295)||(39221904-39222128)
chr2 (114-265)||(39390127-39390278)
chr2 (106-295)||(39415728-39415917)
chr2 (245-420)||(39389586-39389761)
chr2 (90-224)||(39415460-39415594)
chr2 (80-182)||(39603204-39603306)
chr2 (81-214)||(39602962-39603095)
chr2 (69-216)||(38793218-38793365)
chr2 (76-211)||(39137300-39137435)
chr2 (76-216)||(39458728-39458868)
chr2 (105-224)||(39389698-39389817)
chr2 (6-216)||(39397891-39398101)
chr2 (111-267)||(39415607-39415763)
chr2 (117-216)||(38792713-38792812)
chr2 (1-135)||(39161714-39161848)
chr2 (1-135)||(39207346-39207480)
chr2 (22-124)||(39215515-39215617)
chr2 (1-138)||(39389174-39389311)
chr2 (200-384)||(39221248-39221432)
chr2 (90-183)||(39222562-39222655)
chr2 (152-216)||(38792575-38792639)
chr2 (78-213)||(39473860-39473995)
chr2 (135-384)||(39390778-39391027)
chr2 (22-129)||(39137760-39137867)
chr2 (113-224)||(39192841-39192952)
chr2 (113-224)||(39198521-39198632)
chr2 (98-208)||(38792973-38793083)
chr2 (25-119)||(39369996-39370090)
chr2 (89-183)||(39458593-39458687)
chr2 (147-216)||(38792454-38792523)
chr2 (3-216)||(39468130-39468343)
chr2 (66-153)||(39221353-39221440)
chr2 (22-97)||(39473467-39473542)
chr2 (71-224)||(39390630-39390783)
chr2 (143-216)||(39451468-39451541)
chr2 (275-409)||(39390456-39390590)
chr2 (145-224)||(39391031-39391110)
chr2 (71-169)||(39221820-39221918)
chr2 (122-224)||(39415996-39416098)
chr2 (111-223)||(39136625-39136737)
chr2 (23-90)||(39414841-39414908)
chr2 (126-224)||(39415112-39415210)
chr2 (72-123)||(44895631-44895682)
chr2 (71-129)||(39137718-39137776)
chr2 (363-409)||(39390334-39390380)
chr2 (275-329)||(39458699-39458753)
chr2 (134-223)||(39137003-39137092)
chr2 (363-420)||(39222241-39222298)
chr2 (248-329)||(39222458-39222539)
chr2 (59-211)||(39398511-39398663)
chr2 (105-213)||(39451219-39451327)
chr2 (59-156)||(39467623-39467720)
chr2 (75-267)||(39467848-39468040)
chr2 (107-187)||(39390792-39390872)
chr2 (75-214)||(39398191-39398330)
chr2 (71-231)||(39415183-39415343)
chr2 (64-124)||(39459135-39459195)
[»] chr7 (4 HSPs)
chr7 (76-409)||(19807052-19807385)
chr7 (111-223)||(19806986-19807098)
chr7 (22-129)||(19807710-19807817)
chr7 (71-124)||(19807673-19807726)
[»] chr5 (7 HSPs)
chr5 (62-224)||(17059214-17059376)
chr5 (126-420)||(33560370-33560664)
chr5 (4-136)||(33560885-33561017)
chr5 (80-224)||(33560314-33560458)
chr5 (135-214)||(33560198-33560277)
chr5 (76-141)||(33560523-33560588)
chr5 (373-409)||(17059281-17059317)
[»] chr6 (1 HSPs)
chr6 (3-130)||(16113176-16113303)
[»] chr3 (1 HSPs)
chr3 (60-123)||(51574951-51575014)


Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 67)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 39192477 - 39192896
Alignment:
Q  1 agttgagctccttcgcctttgctttgaacttattctcttttaactcaagttcactccatcgtccttctaattgcttctcttttgatttgaactcctccac 100  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39192477 agttgagctccttcacctttgctttgaacttattctcttttgactcaagttcactccatcgtccttctaattgcttctcttttgatttgaactcctccac 39192576  T
Q  101 ttgactttcaaaatgcttctttttagattccagttccttcagttggccttcaaattctctctcttttgattcatgctccttcacctggacttcatgttgc 200  Q
    |||||||| ||||||||||||| ||||||| |||||||||| ||||||||| ||||||||||||||||||||| |||||||||| ||||||||||| |||    
T  39192577 ttgacttttaaaatgcttctttctagattcaagttccttcacttggccttcgaattctctctcttttgattcacgctccttcacttggacttcatgatgc 39192676  T
Q  201 ttctcttttgactcaaactccttctcttggcactcaaatagcttctttttagattcaagctccttcagttggctatcaagttgcttctctttagagtaaa 300  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  39192677 ttctcttttgactcaaactccttcacttggcattcaaatagcttctttttagattccagctccttcagttggctatcaagttgcttctctttagagtaaa 39192776  T
Q  301 attcgttaacttgtcctatcaatggcctcactgttaattttagctccttcctcatgcttactaaatgcttccttttagattccagctcctgcactcggcc 400  Q
    |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  39192777 attccttaacttgtcctatcaatggcctcacagtttattttagctccttcctcatgcctactatatgcttccttttagattccagctcctgcactcggcc 39192876  T
Q  401 ttcaaattccttctcctttg 420  Q
    ||| |||||| |||| ||||    
T  39192877 ttccaattccgtctcttttg 39192896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 39198157 - 39198576
Alignment:
Q  1 agttgagctccttcgcctttgctttgaacttattctcttttaactcaagttcactccatcgtccttctaattgcttctcttttgatttgaactcctccac 100  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39198157 agttgagctccttcacctttgctttgaacttattctcttttgactcaagttcactccatcgtccttctaattgcttctcttttgatttgaactcctccac 39198256  T
Q  101 ttgactttcaaaatgcttctttttagattccagttccttcagttggccttcaaattctctctcttttgattcatgctccttcacctggacttcatgttgc 200  Q
    |||||||| ||||||||||||| ||||||| |||||||||| ||||||||| ||||||||||||||||||||| |||||||||| ||||||||||| |||    
T  39198257 ttgacttttaaaatgcttctttctagattcaagttccttcacttggccttcgaattctctctcttttgattcacgctccttcacttggacttcatgatgc 39198356  T
Q  201 ttctcttttgactcaaactccttctcttggcactcaaatagcttctttttagattcaagctccttcagttggctatcaagttgcttctctttagagtaaa 300  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  39198357 ttctcttttgactcaaactccttcacttggcattcaaatagcttctttttagattccagctccttcagttggctatcaagttgcttctctttagagtaaa 39198456  T
Q  301 attcgttaacttgtcctatcaatggcctcactgttaattttagctccttcctcatgcttactaaatgcttccttttagattccagctcctgcactcggcc 400  Q
    |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  39198457 attccttaacttgtcctatcaatggcctcacagttgattttagctccttcctcatgcctactatatgcttccttttagattccagctcctgcactcggcc 39198556  T
Q  401 ttcaaattccttctcctttg 420  Q
    ||| |||||| |||| ||||    
T  39198557 ttccaattccgtctcttttg 39198576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 69 - 266
Target Start/End: Complemental strand, 39222466 - 39222269
Alignment:
Q  69 aattgcttctcttttgatttgaactcctccacttgactttcaaaatgcttctttttagattccagttccttcagttggccttcaaattctctctcttttg 168  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||    
T  39222466 aattgcctctcttttgatttgaactcctccacttgattttcaaaatgcttctttttggattccagttccttcagttggccttcgaatcctctctcttttg 39222367  T
Q  169 attcatgctccttcacctggacttcatgttgcttctcttttgactcaaactccttctcttggcactcaaatagcttctttttagattcaagctccttc 266  Q
    ||| |||||||||||| ||| ||||| ||||||||||||| |||||||||||||||  |||||  || ||  ||||| |||||||||| |||| ||||    
T  39222366 atttatgctccttcacttggccttcaagttgcttctctttagactcaaactccttcatttggctttcgaaatgcttccttttagattccagctgcttc 39222269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 69 - 224
Target Start/End: Original strand, 39390502 - 39390657
Alignment:
Q  69 aattgcttctcttttgatttgaactcctccacttgactttcaaaatgcttctttttagattccagttccttcagttggccttcaaattctctctcttttg 168  Q
    |||||| |||||| || ||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39390502 aattgcctctcttctgttttgagctcctccacttggctttcaaaatgcttccttttagattccagttccttcatttggccttcaaattctctctcttttg 39390601  T
Q  169 attcatgctccttcacctggacttcatgttgcttctcttttgactcaaactccttc 224  Q
    ||||||||||||||||  ||  ||||||||||||||||||||||||||||||||||    
T  39390602 attcatgctccttcactcggctttcatgttgcttctcttttgactcaaactccttc 39390657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 69 - 220
Target Start/End: Original strand, 39390292 - 39390443
Alignment:
Q  69 aattgcttctcttttgatttgaactcctccacttgactttcaaaatgcttctttttagattccagttccttcagttggccttcaaattctctctcttttg 168  Q
    ||||||||| |||||| ||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39390292 aattgcttcacttttgttttgagctcctccacttggctttcaaaatgcttccttttagattccagttccttcatttggccttcaaattctctctcttttg 39390391  T
Q  169 attcatgctccttcacctggacttcatgttgcttctcttttgactcaaactc 220  Q
    || |||||||||||||  ||  |||||||||||||||||||||| |||||||    
T  39390392 atccatgctccttcactcggctttcatgttgcttctcttttgacccaaactc 39390443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 63 - 224
Target Start/End: Complemental strand, 39221842 - 39221681
Alignment:
Q  63 ccttctaattgcttctcttttgatttgaactcctccacttgactttcaaaatgcttctttttagattccagttccttcagttggccttcaaattctctct 162  Q
    ||||| |||||| |||||||||| |||| ||| |||||||| ||||||||||||||| ||   |||||||  ||||||| ||||||||||||||||||||    
T  39221842 ccttcaaattgcctctcttttgacttgagctcgtccacttggctttcaaaatgcttccttcctgattccaaatccttcatttggccttcaaattctctct 39221743  T
Q  163 cttttgattcatgctccttcacctggacttcatgttgcttctcttttgactcaaactccttc 224  Q
    |||||||| ||||||||||||||  | |||||||||||||||||||||||||||||||||||    
T  39221742 cttttgatccatgctccttcacccagccttcatgttgcttctcttttgactcaaactccttc 39221681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 71 - 205
Target Start/End: Complemental strand, 39451865 - 39451731
Alignment:
Q  71 ttgcttctcttttgatttgaactcctccacttgactttcaaaatgcttctttttagattccagttccttcagttggccttcaaattctctctcttttgat 170  Q
    |||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||| || |||||||||||||||| ||||||||    
T  39451865 ttgcctctcttttgatttgagctcctccacttggctttcaaaatgcttctttttagattccagatccttcactttgccttcaaattctctcacttttgat 39451766  T
Q  171 tcatgctccttcacctggacttcatgttgcttctc 205  Q
    ||||||||| ||||| || | ||||||||| ||||    
T  39451765 tcatgctccatcacccggccctcatgttgcctctc 39451731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 39222891 - 39222754
Alignment:
Q  1 agttgagctccttcgcctttgctttgaacttattctcttttaactcaagttcactccatcgtccttctaattgcttctcttttgatttgaactcctccac 100  Q
    |||||||||||||| |||||||||||||||||||||||| | ||||||||| | |||||||| |||| |||||||||||||||||||| |||||||| ||    
T  39222891 agttgagctccttcacctttgctttgaacttattctcttctgactcaagtttattccatcgttcttcaaattgcttctcttttgatttaaactcctcgac 39222792  T
Q  101 ttgactttcaaaatgcttctttttagattccagttcct 138  Q
    ||| ||||| |||||||||||||| ||||| |||||||    
T  39222791 ttggctttcgaaatgcttcttttttgattcgagttcct 39222754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 71 - 295
Target Start/End: Complemental strand, 39222338 - 39222114
Alignment:
Q  71 ttgcttctcttttgatttgaactcctccacttgactttcaaaatgcttctttttagattccagttccttcagttggccttcaaattctctctcttttgat 170  Q
    |||||||||||| || |  ||||||| || ||| ||||| ||||||||| ||||||||||||| | ||||   |||||||||||||| ||||||||||||    
T  39222338 ttgcttctctttagactcaaactccttcatttggctttcgaaatgcttccttttagattccagctgcttcgcctggccttcaaattccctctcttttgat 39222239  T
Q  171 tcatgctccttcacctggacttcatgttgcttctcttttgactcaaactccttctcttggcactcaaatagcttctttttagattcaagctccttcagtt 270  Q
    | |  || | |||  ||| || || |||| || ||||||||||  ||||||||| ||||||  ||||| ||||||||||||||||| |||||||||| ||    
T  39222238 ttaaacttcctcaattggcctacaagttggttatcttttgactttaactccttcacttggctttcaaacagcttctttttagattccagctccttcactt 39222139  T
Q  271 ggctatcaagttgcttctctttaga 295  Q
    |||||||||||||||||||||||||    
T  39222138 ggctatcaagttgcttctctttaga 39222114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 117 - 326
Target Start/End: Complemental strand, 39136983 - 39136774
Alignment:
Q  117 ttctttttagattccagttccttcagttggccttcaaattctctctcttttgattcatgctccttcacctggacttcatgttgcttctcttttgactcaa 216  Q
    ||||||||| ||| | | ||| ||| ||||| |||||||||||||||||||||| |||||||||||||| || ||||||| |||||||||||||||||||    
T  39136983 ttctttttaaattgctgctccatcacttggctttcaaattctctctcttttgatgcatgctccttcacccggccttcatgctgcttctcttttgactcaa 39136884  T
Q  217 actccttctcttggcactcaaatagcttctttttagattcaagctccttcagttggctatcaagttgcttctctttagagtaaaattcgttaacttgtcc 316  Q
     ||||||   | ||  ||||||  | |||||||||||||| |||||||||| ||||| ||  ||||||||||||||||||  || ||| |||| ||||||    
T  39136883 gctccttgattcggttctcaaactggttctttttagattccagctccttcacttggccattcagttgcttctctttagaggcaagttccttaatttgtcc 39136784  T
Q  317 tatcaatggc 326  Q
    | ||||||||    
T  39136783 tttcaatggc 39136774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 71 - 295
Target Start/End: Complemental strand, 39222128 - 39221904
Alignment:
Q  71 ttgcttctcttttgatttgaactcctccacttgactttcaaaatgcttctttttagattccagttccttcagttggccttcaaattctctctcttttgat 170  Q
    |||||||||||| || |  ||||||| || ||| ||||| ||||||||| ||||||||||||| | ||||   |||||||||||||  ||||||||||||    
T  39222128 ttgcttctctttagactcaaactccttcatttggctttcgaaatgcttccttttagattccagctgcttcgcctggccttcaaattgcctctcttttgat 39222029  T
Q  171 tcatgctccttcacctggacttcatgttgcttctcttttgactcaaactccttctcttggcactcaaatagcttctttttagattcaagctccttcagtt 270  Q
    | |  || | |||  ||| || || |||| || ||||||||||  ||||||||| ||||||  ||||| ||||||||||||||||| |||||||||| ||    
T  39222028 ttaaacttcctcaattggcctacaagttggttatcttttgactttaactccttcacttggctttcaaacagcttctttttagattccagctccttcactt 39221929  T
Q  271 ggctatcaagttgcttctctttaga 295  Q
    |||||||||||||||||||||||||    
T  39221928 ggctatcaagttgcttctctttaga 39221904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 114 - 265
Target Start/End: Original strand, 39390127 - 39390278
Alignment:
Q  114 tgcttctttttagattccagttccttcagttggccttcaaattctctctcttttgattcatgctccttcacctggacttcatgttgcttctcttttgact 213  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||  ||  |||||||||||||||||||||||    
T  39390127 tgcttctttttagattccagttccttcatttggccttcaaaatctctctctttggattcatgctccttcactcggctttcatgttgcttctcttttgact 39390226  T
Q  214 caaactccttctcttggcactcaaatagcttctttttagattcaagctcctt 265  Q
    |||| |||||| |  |||| |||||| || ||| | |||| ||||| |||||    
T  39390227 caaaatccttcacacggcaatcaaattgcatctctctagactcaagttcctt 39390278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 106 - 295
Target Start/End: Original strand, 39415728 - 39415917
Alignment:
Q  106 tttcaaaatgcttctttttagattccagttccttcagttggccttcaaattctctctcttttgattcatgctccttcacctggacttcatgttgcttctc 205  Q
    |||||||  ||||||||||||||| ||| |||||||  ||||||||||||||||||||||||||| ||||||| |||||| || ||||||| ||||||||    
T  39415728 tttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgctgcttctc 39415827  T
Q  206 ttttgactcaaactccttctcttggcactcaaatagcttctttttagattcaagctccttcagttggctatcaagttgcttctctttaga 295  Q
    |||||| |||| ||||||   | ||   |||||  |||||||||||||||| || ||||| | ||||| ||| |||||||||||||||||    
T  39415828 ttttgattcaagctccttgattcggttttcaaactgcttctttttagattccagttcctttacttggccatcgagttgcttctctttaga 39415917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 245 - 420
Target Start/End: Original strand, 39389586 - 39389761
Alignment:
Q  245 ctttttagattcaagctccttcagttggctatcaagttgcttctctttagagtaaaattcgttaacttgtcctatcaatggcctcactgttaattttagc 344  Q
    |||||||||||| | |||||||| ||||| |||||||||||||||||| |||| |||||| | || |||| || ||||| |||||| | || |||| |||    
T  39389586 ctttttagattccacctccttcacttggccatcaagttgcttctctttggagtcaaattcctgaaattgtactttcaatagcctcaattttgatttgagc 39389685  T
Q  345 tccttcctcatgcttactaaatgcttccttttagattccagctcctgcactcggccttcaaattccttctcctttg 420  Q
    |||  | |||||||| | ||||||||| |||||||||||||||||| | || | ||||||||||||||||||||||    
T  39389686 tccaccatcatgctttcgaaatgcttctttttagattccagctccttcgcttgaccttcaaattccttctcctttg 39389761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 90 - 224
Target Start/End: Original strand, 39415460 - 39415594
Alignment:
Q  90 aactcctccacttgactttcaaaatgcttctttttagattccagttccttcagttggccttcaaattctctctcttttgattcatgctccttcacctgga 189  Q
    |||||||  ||||| |||||||| |||||||||||||||||||| ||| ||| ||||| || ||||||||||||||||||||||  ||||||||| ||      
T  39415460 aactcctttacttgtctttcaaattgcttctttttagattccagctccctcacttggcttttaaattctctctcttttgattcacactccttcacttgac 39415559  T
Q  190 cttcatgttgcttctcttttgactcaaactccttc 224  Q
    ||||||||||||||||||||| ||||| |||||||    
T  39415560 cttcatgttgcttctcttttgcctcaagctccttc 39415594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 39603306 - 39603204
Alignment:
Q  80 ttttgatttgaactcctccacttgactttcaaaatgcttctttttagattccagttccttcagttggccttcaaattctctctcttttgattcatgctcc 179  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||  |||   |||||||||||||||||||||||||||||||    
T  39603306 ttttgatgtgaactcctccacttggctttcaaaatgcttctttttagattccagctccttcgcttgaatttcaaattctctctcttttgattcatgctcc 39603207  T
Q  180 ttc 182  Q
    |||    
T  39603206 ttc 39603204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 81 - 214
Target Start/End: Complemental strand, 39603095 - 39602962
Alignment:
Q  81 tttgatttgaactcctccacttgactttcaaaatgcttctttttagattccagttccttcagttggccttcaaattctctctcttttgattcatgctcct 180  Q
    |||||| ||| ||||||||| || ||||||||||||||||||||||||||||| ||| ||| |||||||||||| ||||| |||||||||||||||||||    
T  39603095 tttgatgtgagctcctccacatggctttcaaaatgcttctttttagattccagctccgtcacttggccttcaaactctctttcttttgattcatgctcct 39602996  T
Q  181 tcacctggacttcatgttgcttctcttttgactc 214  Q
    ||| | |   |||||||| |||||||| ||||||    
T  39602995 tcaaccgactttcatgtttcttctcttctgactc 39602962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 69 - 216
Target Start/End: Complemental strand, 38793365 - 38793218
Alignment:
Q  69 aattgcttctcttttgatttgaactcctccacttgactttcaaaatgcttctttttagattccagttccttcagttggccttcaaattctctctcttttg 168  Q
    |||||| ||||||| ||||||| |||||| || || |||||||||||| |||||||||| ||||| |||| || ||  ||||||||||||||  |||||     
T  38793365 aattgcatctctttggatttgagctcctctacctggctttcaaaatgcatctttttagactccagctcctccactttaccttcaaattctctagctttta 38793266  T
Q  169 attcatgctccttcacctggacttcatgttgcttctcttttgactcaa 216  Q
    ||||||||||||||||| |  |||||||||||||||||||| ||||||    
T  38793265 attcatgctccttcacccgaccttcatgttgcttctcttttaactcaa 38793218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 76 - 211
Target Start/End: Complemental strand, 39137435 - 39137300
Alignment:
Q  76 tctcttttgatttgaactcctccacttgactttcaaaatgcttctttttagattccagttccttcagttggccttcaaattctctctcttttgattcatg 175  Q
    ||||||||||||| | |||||||||||| |||||||| |||||| |||||||||| || ||| ||| ||   |||||||||||||| |||||||||||||    
T  39137435 tctcttttgatttaagctcctccacttggctttcaaactgcttcattttagattctagatccatcattttaacttcaaattctctcacttttgattcatg 39137336  T
Q  176 ctccttcacctggacttcatgttgcttctcttttga 211  Q
    |||| ||||| || |||||||||| |||||||||||    
T  39137335 ctccatcacccggccttcatgttgtttctcttttga 39137300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 76 - 216
Target Start/End: Complemental strand, 39458868 - 39458728
Alignment:
Q  76 tctcttttgatttgaactcctccacttgactttcaaaatgcttctttttagattccagttccttcagttggccttcaaattctctctcttttgattcatg 175  Q
    ||||||||||||||| ||||||||||||||||||||||   |||||||||||||| || |||||||  |||||||| |||||||||| ||||||||||||    
T  39458868 tctcttttgatttgagctcctccacttgactttcaaaacaattctttttagattcgagctccttcacatggccttcgaattctctcttttttgattcatg 39458769  T
Q  176 ctccttcacct-ggacttcatgttgcttctcttttgactcaa 216  Q
     | |||| ||| || | ||| ||||||||||||| |||||||    
T  39458768 -tacttcccctcggccatcaagttgcttctctttagactcaa 39458728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 105 - 224
Target Start/End: Original strand, 39389698 - 39389817
Alignment:
Q  105 ctttcaaaatgcttctttttagattccagttccttcagttggccttcaaattctctctcttttgattcatgctccttcacctggacttcatgttgcttct 204  Q
    ||||| ||||||||||||||||||||||| ||||||  ||| |||||||||||  |||| |||||||||||||||| ||  ||| ||||| ||||||||     
T  39389698 ctttcgaaatgcttctttttagattccagctccttcgcttgaccttcaaattccttctcctttgattcatgctcctgcaattggtcttcaagttgcttcc 39389797  T
Q  205 cttttgactcaaactccttc 224  Q
    |||||||||||| |||||||    
T  39389798 cttttgactcaagctccttc 39389817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 6 - 216
Target Start/End: Original strand, 39397891 - 39398101
Alignment:
Q  6 agctccttcgcctttgctttgaacttattctcttttaactcaagttcactccatcgtccttctaattgcttctcttttgatttgaactcctccacttgac 105  Q
    ||||||| | ||||| ||||||||| |||||||||| |||||||||   |||| ||| |||| | |||||| |||||||||||||| ||||| ||||| |    
T  39397891 agctcctgcacctttactttgaactgattctcttttgactcaagttttttccaccgttcttcaatttgcttatcttttgatttgaaatcctcaacttggc 39397990  T
Q  106 tttcaaaatgcttctttttagattccagttccttcagttggccttcaaattctctctcttttgattcatgctccttcacctggacttcatgttgcttctc 205  Q
    ||||||| ||||| ||||   |||| || ||||| | | | ||||| | |||| | |||||  ||||||||||||||||  || ||||||||||||||||    
T  39397991 tttcaaagtgcttattttgtaattcgagctccttaactcgaccttcgagttctttttctttcaattcatgctccttcactcgggcttcatgttgcttctc 39398090  T
Q  206 ttttgactcaa 216  Q
     ||||| ||||    
T  39398091 atttgaatcaa 39398101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 111 - 267
Target Start/End: Original strand, 39415607 - 39415763
Alignment:
Q  111 aaatgcttctttttagattccagttccttcagttggccttcaaattctctctcttttgattcatgctccttcacctggacttcatgttgcttctcttttg 210  Q
    |||||||||| ||| ||| |||||||||||| ||||||||||||||| ||||||||||||| |  ||||||||  ||| || |  ||||||  |||||||    
T  39415607 aaatgcttctgttttgatgccagttccttcatttggccttcaaattccctctcttttgatttaaactccttcatttggtctacgagttgctgttcttttg 39415706  T
Q  211 actcaaactccttctcttggcactcaaatagcttctttttagattcaagctccttca 267  Q
    |||| ||||||||  |||||   ||||| ||||||||||||||||  ||||||||||    
T  39415707 actctaactccttgacttggatttcaaacagcttctttttagatttcagctccttca 39415763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 117 - 216
Target Start/End: Complemental strand, 38792812 - 38792713
Alignment:
Q  117 ttctttttagattccagttccttcagttggccttcaaattctctctcttttgattcatgctccttcacctggacttcatgttgcttctcttttgactcaa 216  Q
    |||| |||||||||| | ||||||| ||| |||||||||||||||||||||||||| |||||||||||| || |||||| |||||| ||||| |||||||    
T  38792812 ttctgtttagattcctggtccttcacttgaccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaa 38792713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 39161848 - 39161714
Alignment:
Q  1 agttgagctccttcgcctttgctttgaacttattctcttttaactcaagttcactccatcgtccttctaattgcttctcttttgatttgaactcctccac 100  Q
    |||||||||||||| | ||| |||||| ||||| ||||||   ||| |||||| |||| |||||||| ||||| |||| |||||||||||| ||||| ||    
T  39161848 agttgagctccttctcatttactttgagcttatactctttcgtctccagttcattccaccgtccttcaaattgtttctgttttgatttgaagtcctcaac 39161749  T
Q  101 ttgactttcaaaatgcttctttttagattccagtt 135  Q
    ||| |||||||||||||| ||||| ||||| ||||    
T  39161748 ttgtctttcaaaatgcttattttttgattcgagtt 39161714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 39207346 - 39207480
Alignment:
Q  1 agttgagctccttcgcctttgctttgaacttattctcttttaactcaagttcactccatcgtccttctaattgcttctcttttgatttgaactcctccac 100  Q
    |||||||||||||| | ||| |||||| ||||| ||||||   ||| |||||| |||| |||||||| ||||| |||| |||||||||||| ||||| ||    
T  39207346 agttgagctccttctcatttactttgagcttatactctttcgtctccagttcattccaccgtccttcaaattgtttctgttttgatttgaagtcctcaac 39207445  T
Q  101 ttgactttcaaaatgcttctttttagattccagtt 135  Q
    ||| |||||||||||||| ||||| ||||| ||||    
T  39207446 ttgtctttcaaaatgcttattttttgattcgagtt 39207480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 39215617 - 39215515
Alignment:
Q  22 ctttgaacttattctcttttaactcaagttcactccatcgtccttctaattgcttctcttttgatttgaactcctccacttgactttcaaaatgcttctt 121  Q
    |||||||||||||||||||||||||||||||  |||| |||||||| |||||||||||||||||||  ||   ||| ||||| |||||||| ||||||||    
T  39215617 ctttgaacttattctcttttaactcaagttctttccaccgtccttcaaattgcttctcttttgattcaaagctctcaacttgtctttcaaattgcttctt 39215518  T
Q  122 ttt 124  Q
    |||    
T  39215517 ttt 39215515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 39389174 - 39389311
Alignment:
Q  1 agttgagctccttcgcctttgctttgaacttattctcttttaactcaagttcactccatcgtccttctaattgcttctcttttgatttgaactcctccac 100  Q
    |||||||||||||| ||||| |||||||||||| |||||| ||||| |||||  ||||||||| ||  ||| ||| ||||||||||||||| ||||| ||    
T  39389174 agttgagctccttcacctttactttgaacttatactctttcaactccagttcgttccatcgtcttttaaatcgctgctcttttgatttgaagtcctcaac 39389273  T
Q  101 ttgactttcaaaatgcttctttttagattccagttcct 138  Q
    ||| ||||  ||||||| |||||  ||||| |||||||    
T  39389274 ttggcttttcaaatgctccttttgtgattcgagttcct 39389311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 200 - 384
Target Start/End: Complemental strand, 39221432 - 39221248
Alignment:
Q  200 cttctcttttgactcaaactccttctcttggcactcaaatagcttctttttagattcaagctccttcagttggctatcaagttgcttctctttagagtaa 299  Q
    ||||| |||||| |||||||||||| | || |  |||||  | ||||||| |||||| |||||||||| ||||| |||||||||||||||||| |||| |    
T  39221432 cttcttttttgattcaaactccttcacctgactttcaaagtgattcttttgagattccagctccttcacttggccatcaagttgcttctctttggagtca 39221333  T
Q  300 aattcgttaacttgtcctatcaatggcctcactgttaattttagctccttcctcatgcttactaaatgcttccttttagattcca 384  Q
    | ||| | ||| |||||| ||||||  ||||   || |||| ||||||| | |||||||| | ||||||||| ||||||||||||    
T  39221332 agttcctcaacctgtcctttcaatgaactcatgcttgatttgagctcctccatcatgctttcgaaatgcttctttttagattcca 39221248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 90 - 183
Target Start/End: Complemental strand, 39222655 - 39222562
Alignment:
Q  90 aactcctccacttgactttcaaaatgcttctttttagattccagttccttcagttggccttcaaattctctctcttttgattcatgctccttca 183  Q
    |||||||  ||||| |||||||  |||||||||||||||| ||| ||||||| |||   |||||||||||||||||||||||||||||||||||    
T  39222655 aactccttaacttggctttcaacctgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttca 39222562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 38792639 - 38792575
Alignment:
Q  152 aaattctctctcttttgattcatgctccttcacctggacttcatgttgcttctcttttgactcaa 216  Q
    ||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||| |||||||    
T  38792639 aaattctctcttttttgattcatgctcctccacctggccttcatgttgcttctctttcgactcaa 38792575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 78 - 213
Target Start/End: Original strand, 39473860 - 39473995
Alignment:
Q  78 tcttttgatttgaactcctccacttgactttcaaaatgcttctttttagattccagttccttcagttggccttcaaattctctctcttttgattcatgct 177  Q
    |||| ||||||||  |||||||||||  |||| |||| ||||||||||||||| ||  ||||||  |||| |||||||||||||| |||||||| |||||    
T  39473860 tcttctgatttgagatcctccacttgcatttctaaattcttctttttagattctagccccttcacctggctttcaaattctctctgttttgatttatgct 39473959  T
Q  178 ccttcacctggacttcatgttgcttctcttttgact 213  Q
    ||| |||  || | ||| | ||||||||||||||||    
T  39473960 cctccactcggccatcaagctgcttctcttttgact 39473995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 135 - 384
Target Start/End: Original strand, 39390778 - 39391027
Alignment:
Q  135 tccttcagttggccttcaaattctctctcttttgattcatgctccttcacctggacttcatgttgcttctcttttgactcaaactccttctcttggcact 234  Q
    ||||||||||   ||||||||||  ||| ||||||||||   ||||||||  || ||||| ||||  ||||||||||||||||||||||| | ||    |    
T  39390778 tccttcagttcatcttcaaattccttcttttttgattcaaattccttcactcggccttcaagttgactctcttttgactcaaactccttcacctgttttt 39390877  T
Q  235 caaa-tagcttctttttagattcaagctccttcagttggctatcaagttgcttctctttagagtaaaattcgttaacttgtcctatcaatggcctcactg 333  Q
    |||| ||| | |||||||||||| ||||| || | |||   ||||||||||||||||||||||| || ||| | ||||||| || |||| | ||||| |     
T  39390878 caaagtag-tcctttttagattctagctctttaatttgatgatcaagttgcttctctttagagtcaagttcctcaacttgttctttcaaagacctcattc 39390976  T
Q  334 ttaattttagctccttcctcatgcttactaaatgcttccttttagattcca 384  Q
    || |||| ||||||| | |||||| | | ||||||||| ||||||||||||    
T  39390977 ttgatttgagctcctccatcatgccttcgaaatgcttctttttagattcca 39391027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 39137867 - 39137760
Alignment:
Q  22 ctttgaacttattctcttttaactcaagttcactccatcgtccttctaattgcttctcttttgatttgaactcctccacttgactttcaaaatgcttctt 121  Q
    |||||||||||||||||||| |||| |||||  |||| ||| |||| | ||||||||||||||||||| | ||||| ||||| |||||||  |||||||     
T  39137867 ctttgaacttattctcttttgactcgagttctttccaccgttcttcaatttgcttctcttttgatttgtaatcctcgacttggctttcaagttgcttctc 39137768  T
Q  122 tttagatt 129  Q
    ||| ||||    
T  39137767 ttttgatt 39137760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 113 - 224
Target Start/End: Original strand, 39192841 - 39192952
Alignment:
Q  113 atgcttctttttagattccagttccttcagttggccttcaaattctctctcttttgattcatgctccttcacctggacttcatgttgcttctcttttgac 212  Q
    ||||||| ||||||||||||| |||| || | ||||||| |||||  ||||||||||||||  || ||||||| |  ||||||||||| |||| ||||||    
T  39192841 atgcttccttttagattccagctcctgcactcggccttccaattccgtctcttttgattcaaacttcttcacccgaccttcatgttgcatctcgtttgac 39192940  T
Q  213 tcaaactccttc 224  Q
    |||| |||||||    
T  39192941 tcaagctccttc 39192952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 113 - 224
Target Start/End: Original strand, 39198521 - 39198632
Alignment:
Q  113 atgcttctttttagattccagttccttcagttggccttcaaattctctctcttttgattcatgctccttcacctggacttcatgttgcttctcttttgac 212  Q
    ||||||| ||||||||||||| |||| || | ||||||| |||||  ||||||||||||||  || ||||||| |  ||||||||||| |||| ||||||    
T  39198521 atgcttccttttagattccagctcctgcactcggccttccaattccgtctcttttgattcaaacttcttcacccgaccttcatgttgcatctcgtttgac 39198620  T
Q  213 tcaaactccttc 224  Q
    |||| |||||||    
T  39198621 tcaagctccttc 39198632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 98 - 208
Target Start/End: Complemental strand, 38793083 - 38792973
Alignment:
Q  98 cacttgactttcaaaatgcttctttttagattccagttccttcagttggccttcaaattctctctcttttgattcatgctccttcacctggacttcatgt 197  Q
    |||||| || ||||| |||||||| |||||||| || ||||||| ||| ||||||||||||| ||  ||||| ||||||||||||| | || |||||| |    
T  38793083 cacttggctgtcaaagtgcttcttcttagattctagctccttcacttgaccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattt 38792984  T
Q  198 tgcttctcttt 208  Q
    || ||||||||    
T  38792983 tggttctcttt 38792973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 119
Target Start/End: Complemental strand, 39370090 - 39369996
Alignment:
Q  25 tgaacttattctcttttaactcaagttcactccatcgtccttctaattgcttctcttttgatttgaactcctccacttgactttcaaaatgcttc 119  Q
    ||||||| ||||||||||||||||||||  |||| |||||||| |||||||| ||||| |||||||| | ||| |||||  ||||||| ||||||    
T  39370090 tgaacttgttctcttttaactcaagttctttccaccgtccttcaaattgcttttctttcgatttgaagtgctcgacttgggtttcaaattgcttc 39369996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 89 - 183
Target Start/End: Complemental strand, 39458687 - 39458593
Alignment:
Q  89 gaactcctccacttgactttcaaaatgcttctttttagattccagttccttcagttggccttcaaattctctctcttttgattcatgctccttca 183  Q
    ||||||||||||||| |||||||||  |||||||| ||||||||| |||||||  ||  ||||||| ||||||| |||||| ||| |||||||||    
T  39458687 gaactcctccacttggctttcaaaactcttcttttcagattccagctccttcacctgctcttcaaaatctctcttttttgactcaagctccttca 39458593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 38792523 - 38792454
Alignment:
Q  147 ccttcaaattctctctcttttgattcatgctccttcacctggacttcatgttgcttctcttttgactcaa 216  Q
    |||||||||||||||  |||||||||||||||||||||| |  ||||||| |||||||||||| ||||||    
T  38792523 ccttcaaattctctcgtttttgattcatgctccttcacccgaccttcatgctgcttctcttttaactcaa 38792454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 39468343 - 39468130
Alignment:
Q  3 ttgagctccttcgcctttgctttgaacttattctcttttaactcaagttcactccatcgtccttctaattgcttctcttttgatttgaactcctccactt 102  Q
    |||| ||||||| ||||| ||||||||  |||||||||| |||  | |||  | || ||| | || |||||||| |||||||||||||| ||||| ||||    
T  39468343 ttgaactccttcacctttactttgaaccgattctcttttgacttcaattctttacaccgttcatcaaattgcttatcttttgatttgaaatcctcaactt 39468244  T
Q  103 gactttcaaaatgcttctttttagattccagttccttcagttggccttcaaattctctctcttttgattcatgctccttcacctggacttcatgttgctt 202  Q
    |||| |||||||  |||||||| ||||| || ||||| | | | ||||| | | |  |  ||||| | ||||||||||||||  || |||||||||||||    
T  39468243 gactgtcaaaatatttcttttttgattcgagctccttaactcgaccttcgagtacctttgcttttaagtcatgctccttcactcgggcttcatgttgctt 39468144  T
Q  203 ctcttttgactcaa 216  Q
    | ||||||| ||||    
T  39468143 cacttttgaatcaa 39468130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 153
Target Start/End: Complemental strand, 39221440 - 39221353
Alignment:
Q  66 tctaattgcttctcttttgatttgaactcctccacttgactttcaaaatgcttctttttagattccagttccttcagttggccttcaa 153  Q
    ||||||| ||||| ||||||||  ||||||| ||| ||||||||||| || ||||||| ||||||||| ||||||| |||||| ||||    
T  39221440 tctaattccttcttttttgattcaaactccttcacctgactttcaaagtgattcttttgagattccagctccttcacttggccatcaa 39221353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 39473467 - 39473542
Alignment:
Q  22 ctttgaacttattctcttttaactcaagttcactccatcgtccttctaattgcttctcttttgatttgaactcctc 97  Q
    |||||||||||||||||||| |||| |||||  |||||||| |||| ||||||||| || |||||||||| |||||    
T  39473467 ctttgaacttattctcttttgactcgagttctttccatcgttcttcaaattgcttcgctattgatttgaattcctc 39473542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 39390630 - 39390783
Alignment:
Q  71 ttgcttctcttttgatttgaactcctccacttgactttcaaaatgcttctttttagattccagttccttcagttggccttcaaattctctctcttttgat 170  Q
    ||||||||||||||| |  ||||||| || ||| |||||||||||||||| ||| |||  ||  ||| ||| ||||| |||||||||  |||||||||||    
T  39390630 ttgcttctcttttgactcaaactccttcatttggctttcaaaatgcttctgttttgatagcaaatccatcatttggcattcaaattccttctcttttgat 39390729  T
Q  171 tcatgctccttcacctggacttcatgttgcttctcttttgactcaaactccttc 224  Q
    |||  |||||| || | | || ||  ||  || |||||||||||||||||||||    
T  39390730 tcaaactcctttactttgcctacaaatttgttatcttttgactcaaactccttc 39390783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 39451541 - 39451468
Alignment:
Q  143 ttggccttcaaattctctctcttttgattcatgctccttcacctggacttcatgttgcttctcttttgactcaa 216  Q
    |||||||||||| ||||| |||||||||||||||||||||| | ||  |||| |||||||||| ||||| ||||    
T  39451541 ttggccttcaaactctctttcttttgattcatgctccttcaaccggctttcaagttgcttctcatttgagtcaa 39451468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 409
Target Start/End: Original strand, 39390456 - 39390590
Alignment:
Q  275 atcaagttgcttctctttagagtaaaattcgttaacttgtcctatcaatggcctcactgttaattttagctccttcctcatg-cttactaaatgcttcct 373  Q
    ||||| ||||||||||||||| | || ||| |||||||||||| ||||| ||||| ||  |  ||| ||||||| || | || ||| | |||||||||||    
T  39390456 atcaaattgcttctctttagactcaagttccttaacttgtcctttcaattgcctctcttctgttttgagctcct-ccacttggctttcaaaatgcttcct 39390554  T
Q  374 tttagattccagctcctgcactcggccttcaaattc 409  Q
    |||||||||||| |||| || | |||||||||||||    
T  39390555 tttagattccagttccttcatttggccttcaaattc 39390590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 224
Target Start/End: Original strand, 39391031 - 39391110
Alignment:
Q  145 ggccttcaaattctctctcttttgattcatgctccttcacctggacttcatgttgcttctcttttgactcaaactccttc 224  Q
    |||||||||||||  |||| ||| |||||||||||||||  ||| ||||| |||| |||||||| ||||||| |||||||    
T  39391031 ggccttcaaattccttctcctttaattcatgctccttcaattggccttcaagttgtttctctttggactcaagctccttc 39391110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 169
Target Start/End: Complemental strand, 39221918 - 39221820
Alignment:
Q  71 ttgcttctcttttgatttgaactcctccacttgactttcaaaatgcttctttttagattccagttccttcagttggccttcaaattctctctcttttga 169  Q
    |||||||||||| || |  ||||||| || ||| ||||| ||||||||| ||||||||||||| | ||||   |||||||||||||  |||||||||||    
T  39221918 ttgcttctctttagactcaaactccttcatttggctttcgaaatgcttccttttagattccagctgcttcgcctggccttcaaattgcctctcttttga 39221820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 39415996 - 39416098
Alignment:
Q  122 tttagattccagttccttcagttggccttcaaattctctctcttttgattcatgctccttcacctggacttcatgttgcttctcttttgactcaaactcc 221  Q
    |||||||||||| || |||| | || ||||||||||| | ||||  ||||||||||||||||  ||| || || |||||||||| || ||||||| ||||    
T  39415996 tttagattccagctcattcactcggtcttcaaattctttttcttcggattcatgctccttcaattggcctccaagttgcttctcattagactcaagctcc 39416095  T
Q  222 ttc 224  Q
    |||    
T  39416096 ttc 39416098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #50
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 223
Target Start/End: Complemental strand, 39136737 - 39136625
Alignment:
Q  111 aaatgcttctttttagattccagttccttcagttggccttcaaattctctctcttttgattcatgctccttcacctggacttcatgttgcttctcttttg 210  Q
    |||||| ||| |||||||||||| || ||||   |||||||||||||| | ||||   |||||||||||||||   || ||||| ||||| ||||||| |    
T  39136737 aaatgcctctctttagattccagctcattcatccggccttcaaattctttttcttccaattcatgctccttcaatcggccttcaagttgcctctctttcg 39136638  T
Q  211 actcaaactcctt 223  Q
    |||||| ||||||    
T  39136637 actcaagctcctt 39136625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #51
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 39414841 - 39414908
Alignment:
Q  23 tttgaacttattctcttttaactcaagttcactccatcgtccttctaattgcttctcttttgatttga 90  Q
    ||||||||||||||| |||  ||  |||||  |||||||| |||| ||||||||||||||||||||||    
T  39414841 tttgaacttattctcatttgtcttgagttctttccatcgttcttcaaattgcttctcttttgatttga 39414908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #52
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 39415112 - 39415210
Alignment:
Q  126 gattccagttccttcagttggccttc-aaattctctctcttttgattcatgctccttcacctggacttcatgttgcttctcttttgactcaaactccttc 224  Q
    ||||| || ||||||||||||| ||| |||| || ||| || ||||||  ||||||||||  |  ||||||||||||||||||||||||||| |||||||    
T  39415112 gattcaagctccttcagttggctttcgaaatgct-tcttttctgattccagctccttcactcgaccttcatgttgcttctcttttgactcaagctccttc 39415210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #53
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 44895631 - 44895682
Alignment:
Q  72 tgcttctcttttgatttgaactcctccacttgactttcaaaatgcttctttt 123  Q
    ||||||||||||||||||||  |||| ||||| ||||||||| |||||||||    
T  44895631 tgcttctcttttgatttgaaggcctcaacttggctttcaaaacgcttctttt 44895682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #54
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 39137776 - 39137718
Alignment:
Q  71 ttgcttctcttttgatttgaactcctccacttgactttcaaaatgcttctttttagatt 129  Q
    ||||||||||||||||||||| ||||| |||||  |||| || ||||||||||| ||||    
T  39137776 ttgcttctcttttgatttgaaatcctcaacttggttttcgaattgcttcttttttgatt 39137718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #55
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 409
Target Start/End: Original strand, 39390334 - 39390380
Alignment:
Q  363 aaatgcttccttttagattccagctcctgcactcggccttcaaattc 409  Q
    ||||||||||||||||||||||| |||| || | |||||||||||||    
T  39390334 aaatgcttccttttagattccagttccttcatttggccttcaaattc 39390380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #56
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 329
Target Start/End: Complemental strand, 39458753 - 39458699
Alignment:
Q  275 atcaagttgcttctctttagagtaaaattcgttaacttgtcctatcaatggcctc 329  Q
    ||||||||||||||||||||| | || ||| |||||||||||| ||||| |||||    
T  39458753 atcaagttgcttctctttagactcaagttccttaacttgtcctttcaattgcctc 39458699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #57
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 223
Target Start/End: Complemental strand, 39137092 - 39137003
Alignment:
Q  134 ttccttcagttggccttcaaattctctctcttttgattcatgctccttcacctggacttcatgttgcttctcttttgactcaaactcctt 223  Q
    |||||||| |||||||||||||||  |||||||||||| |  ||||||||  ||| || || |||| || ||||||||||| ||| ||||    
T  39137092 ttccttcatttggccttcaaattccatctcttttgatttaaactccttcatttggtctacaagttggttttcttttgactctaacgcctt 39137003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #58
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 420
Target Start/End: Complemental strand, 39222298 - 39222241
Alignment:
Q  363 aaatgcttccttttagattccagctcctgcactcggccttcaaattccttctcctttg 420  Q
    ||||||||||||||||||||||||| || | |  |||||||||||||| |||| ||||    
T  39222298 aaatgcttccttttagattccagctgcttcgcctggccttcaaattccctctcttttg 39222241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #59
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 329
Target Start/End: Complemental strand, 39222539 - 39222458
Alignment:
Q  248 tttagattcaagctccttcagttggctatcaagttgcttctctttagagtaaaattcgttaacttgtcctatcaatggcctc 329  Q
    ||||||||||| |||||||| | ||| ||||| || |||||||||||| | || ||| ||||| |||||| ||||| |||||    
T  39222539 tttagattcaaactccttcactcggccatcaaatttcttctctttagactcaatttccttaacctgtcctttcaattgcctc 39222458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #60
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 211
Target Start/End: Original strand, 39398511 - 39398663
Alignment:
Q  59 tcgtccttctaattgcttctcttttgatttgaactcctccacttgactttcaaaatgcttctttttagattccagttccttcagttggccttcaaattct 158  Q
    |||||||| ||| |||||||| ||||| |  ||||||| || | |  ||||||||||||||| ||| ||| | || ||||||  |||||||||||||| |    
T  39398511 tcgtccttgtaagtgcttctcctttgactctaactccttcaatcggatttcaaaatgcttctgttttgatacaagctccttctcttggccttcaaatt-t 39398609  T
Q  159 ctct-cttttgattcatgctccttcacctggacttcatgttgcttctcttttga 211  Q
    ||||  |||||||| |  ||| ||| || |||||||| ||||| ||||||||||    
T  39398610 ctctagttttgatttaaactcattctcccggacttcaagttgcatctcttttga 39398663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #61
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 213
Target Start/End: Complemental strand, 39451327 - 39451219
Alignment:
Q  105 ctttcaaaatgcttctttttagattccagttccttcagttggccttcaa-attctctctcttttgattcatgctccttcacctggacttcatgttgcttc 203  Q
    |||||||| |||| ||||||| ||||||| ||||| | |||||||||||  ||||| |||||||||||||  |||||||  | || ||||| ||||| ||    
T  39451327 ctttcaaagtgctcctttttaaattccagctccttgatttggccttcaactttctc-ctcttttgattcaaactccttcttccggccttcaagttgcatc 39451229  T
Q  204 tcttttgact 213  Q
    | ||||||||    
T  39451228 ttttttgact 39451219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #62
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 156
Target Start/End: Complemental strand, 39467720 - 39467623
Alignment:
Q  59 tcgtccttctaattgcttctcttttgatttgaactcctccacttgactttcaaaatgcttctttttagattccagttccttcagttggccttcaaatt 156  Q
    |||||||||||| || ||||| ||||| |  ||||||| || | | |||||||||||||||| ||| ||| | || ||||||  ||||||||||||||    
T  39467720 tcgtccttctaagtgattctcctttgactctaactccttcaatcggctttcaaaatgcttctgttttgatacaagctccttctcttggccttcaaatt 39467623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #63
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 267
Target Start/End: Complemental strand, 39468040 - 39467848
Alignment:
Q  75 ttctcttttgatttgaactcctccacttgactttcaaaatgcttctttttagattccagttccttcagttggccttcaaa-ttctctctcttttgattca 173  Q
    ||||||||||| |  ||||||| || ||| |||| ||  ||||  |||||| ||||||| |||||||  ||||||||||| ||||| |||||||||||||    
T  39468040 ttctcttttgactccaactccttcaattggctttgaatgtgctgttttttaaattccagctccttcatctggccttcaaatttctc-ctcttttgattca 39467942  T
Q  174 tgctccttcacctggacttcatgttgcttctcttttgactcaaactccttctcttggcactcaaatagcttctttttagattcaagctccttca 267  Q
      |||||||  | || ||||| | ||| ||||||||||||| | |||| |  |  | |  |||| | |||||||||| ||||||||||||||||    
T  39467941 aactccttcttccggccttcaagctgcatctcttttgactctagctccattgcccgtccttcaacttgcttcttttttgattcaagctccttca 39467848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #64
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 39390792 - 39390872
Alignment:
Q  107 ttcaaaatgcttctttttagattccagttccttcagttggccttcaaattctctctcttttgattcatgctccttcacctg 187  Q
    |||||| | ||||||||| ||||| | |||||||| | ||||||||| ||  ||||||||||| |||  ||||||||||||    
T  39390792 ttcaaattccttcttttttgattcaaattccttcactcggccttcaagttgactctcttttgactcaaactccttcacctg 39390872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #65
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 214
Target Start/End: Original strand, 39398191 - 39398330
Alignment:
Q  75 ttctcttttgatttgaactcctccacttgactttcaaaatgcttctttttagattccagttccttcagttggccttcaaa-ttctctctcttttgattca 173  Q
    ||||||||||| |  ||||||| || ||| |||||||| ||||   ||||| ||||| | |||||||  ||||||||||| ||||| ||||||||| |||    
T  39398191 ttctcttttgactctaactccttcaattggctttcaaagtgctgtattttaaattcccgctccttcatctggccttcaaatttctc-ctcttttgactca 39398289  T
Q  174 tgctccttcacctggacttcatgttgcttctcttttgactc 214  Q
      |||||||  | || ||||| ||||| |||||||||||||    
T  39398290 aactccttcttccggccttcaagttgcatctcttttgactc 39398330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #66
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 231
Target Start/End: Original strand, 39415183 - 39415343
Alignment:
Q  71 ttgcttctcttttgatttgaactcctccacttgactttcaaaatgcttctttttagattccagttccttcagttggccttcaaattctctctcttttgat 170  Q
    ||||||||||||||| |  | ||||| || | | ||||||||||| |||  ||| ||| |||  || |||| ||| |||| || ||||||||| ||  ||    
T  39415183 ttgcttctcttttgactcaagctccttcattcggctttcaaaatgattcagttttgataccaaatcattcacttgacctttaagttctctctcgttcaat 39415282  T
Q  171 tcatgctccttcacctggacttcatgttgcttctcttttgactcaaactccttctcttggc 231  Q
    |||||||||||||   ||||||||| ||||||  |||| ||||||| ||| ||| ||||||    
T  39415283 tcatgctccttcaatcggacttcatcttgctttgctttcgactcaagctctttcacttggc 39415343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #67
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 39459195 - 39459135
Alignment:
Q  64 cttctaattgcttctcttttgatttgaactcctccacttgactttcaaaatgcttcttttt 124  Q
    |||| ||||||||||||||| ||||||| ||||| |  || |||||||| |||||||||||    
T  39459195 cttcaaattgcttctcttttaatttgaagtcctcaaactggctttcaaattgcttcttttt 39459135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 4e-48; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 76 - 409
Target Start/End: Complemental strand, 19807385 - 19807052
Alignment:
Q  76 tctcttttgatttgaactcctccacttgactttcaaaatgcttctttttagattccagttccttcagttggccttcaaattctctctcttttgattcatg 175  Q
    ||||||||||||| | |||||||||||| ||||||||  ||||||||||||||| | | ||| ||| ||||| |||||||||||||||||||||| ||||    
T  19807385 tctcttttgatttaagctcctccacttggctttcaaacagcttctttttagattgctgctccatcatttggctttcaaattctctctcttttgatgcatg 19807286  T
Q  176 ctccttcacctggacttcatgttgcttctcttttgactcaaactccttctcttggcactcaaatagcttctttttagattcaagctccttcagttggcta 275  Q
    |||||||| | || ||||||| ||||||||||||||||||| ||||||   | ||   |||||  || ||||||||||||| |||||||||| ||||| |    
T  19807285 ctccttcatccggccttcatgctgcttctcttttgactcaagctccttgattcggttttcaaactgcctctttttagattccagctccttcacttggcca 19807186  T
Q  276 tcaagttgcttctctttagagtaaaattcgttaacttgtcctatcaatggcctcactgttaattttagctccttcctcatgcttactaaatgcttccttt 375  Q
    |  ||||||||||||||||||  ||  || |||| ||||||| |||||||| ||| | ||   || ||||||| |  |  ||||   |||||| ||  ||    
T  19807185 ttgagttgcttctctttagaggcaagctccttaagttgtcctttcaatggcatcaattttgtattgagctcctccacctcgcttttgaaatgcctctctt 19807086  T
Q  376 tagattccagctcctgcactcggccttcaaattc 409  Q
    ||||||||||||| | ||||||||||||||||||    
T  19807085 tagattccagctcattcactcggccttcaaattc 19807052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 111 - 223
Target Start/End: Complemental strand, 19807098 - 19806986
Alignment:
Q  111 aaatgcttctttttagattccagttccttcagttggccttcaaattctctctcttttgattcatgctccttcacctggacttcatgttgcttctcttttg 210  Q
    |||||| ||| |||||||||||| || |||| | ||||||||||||||   |||| |||||||||||||||||   || ||||| ||||| ||||||| |    
T  19807098 aaatgcctctctttagattccagctcattcactcggccttcaaattcttgttcttctgattcatgctccttcaatcggccttcaagttgcctctctttcg 19806999  T
Q  211 actcaaactcctt 223  Q
    |||||| ||||||    
T  19806998 actcaagctcctt 19806986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 19807817 - 19807710
Alignment:
Q  22 ctttgaacttattctcttttaactcaagttcactccatcgtccttctaattgcttctcttttgatttgaactcctccacttgactttcaaaatgcttctt 121  Q
    |||||||||||||||||||| |||| |||||  |||| | | |||| | ||| ||||||||||||||| | ||||| ||||| |||||||  |||||||     
T  19807817 ctttgaacttattctcttttgactcgagttctttccacctttcttcaatttgattctcttttgatttgtattcctcgacttggctttcaagttgcttctc 19807718  T
Q  122 tttagatt 129  Q
    ||| ||||    
T  19807717 ttttgatt 19807710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 19807726 - 19807673
Alignment:
Q  71 ttgcttctcttttgatttgaactcctccacttgactttcaaaatgcttcttttt 124  Q
    ||||||||||||||||||||| ||||| |||||  |||| || |||||||||||    
T  19807726 ttgcttctcttttgatttgaagtcctcaacttggttttcgaattgcttcttttt 19807673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 62 - 224
Target Start/End: Complemental strand, 17059376 - 17059214
Alignment:
Q  62 tccttctaattgcttctcttttgatttgaactcctccacttgactttcaaaatgcttctttttagattccagttccttcagttggccttcaaattctctc 161  Q
    |||||| |||||| ||||||||||||||| ||||||||||||  | ||||||| ||| |||||||||||||| ||||||| | ||||||||||||| |||    
T  17059376 tccttccaattgcctctcttttgatttgagctcctccacttggatatcaaaatccttttttttagattccagctccttcactaggccttcaaattcactc 17059277  T
Q  162 tcttttgattcatgctccttcacctggacttcatgttgcttctcttttgactcaaactccttc 224  Q
    ||||||||||  |||||| ||||| |  |||||||||| |||||||||||  ||| |||||||    
T  17059276 tcttttgatttgtgctccatcaccagtgcttcatgttgtttctcttttgatgcaagctccttc 17059214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 126 - 420
Target Start/End: Complemental strand, 33560664 - 33560370
Alignment:
Q  126 gattccagttccttcagttggccttcaaattctctctcttttgattcatgctccttcacctggacttcatgttgcttctcttttgactcaaactccttct 225  Q
    |||||||  |||||||||||||||||||||||  ||| |||| ||| |  ||||||||  ||| || || ||||  ||||||||||||||||||||||      
T  33560664 gattccaactccttcagttggccttcaaattccttcttttttaatttaaactccttcagttggcctacaagttgactctcttttgactcaaactccttaa 33560565  T
Q  226 cttggcactcaaatagcttctttttagattcaagctccttcagttggctatcaagttgcttctctttagagtaaaattcgttaacttgtcctatcaatgg 325  Q
    |||| |  |||||  | |||||||||||||| ||||||||||  || | ||||||||||||||||||||| | || ||| | || |||| || |||| |     
T  33560564 cttgtctttcaaagtggttctttttagattccagctccttcacctgaccatcaagttgcttctctttagaatcaagttcttgaagttgttctttcaacga 33560465  T
Q  326 cctcactgttaattttagctccttcctcatgcttactaaatgcttccttttagattccagctcctgcactcggccttcaaattccttctcctttg 420  Q
    ||||| | || |||| ||||||| |  ||||||| | |||||||||  |||| |||||| ||||| ||| | |||||||||||||||||||||||    
T  33560464 cctcaattttgatttgagctcctccaccatgctttcgaaatgcttcgctttatattccatctccttcacacagccttcaaattccttctcctttg 33560370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 136
Target Start/End: Complemental strand, 33561017 - 33560885
Alignment:
Q  4 tgagctccttcgcctttgctttgaacttattctcttttaactcaagttcactccatcgtccttctaattgcttctcttttgatttgaactcctccacttg 103  Q
    ||||||||||| ||||| | | |||||| | ||||||  |||| |||||| |||||||| | |  ||||| |||| |||||||||||| ||||| |||||    
T  33561017 tgagctccttcaccttttcatcgaacttgtactctttcgactccagttcattccatcgtacctgaaattggttctgttttgatttgaagtcctcaacttg 33560918  T
Q  104 actttcaaaatgcttctttttagattccagttc 136  Q
     ||| |||||||||||| ||| ||||| |||||    
T  33560917 tcttgcaaaatgcttctcttttgattcgagttc 33560885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 224
Target Start/End: Complemental strand, 33560458 - 33560314
Alignment:
Q  80 ttttgatttgaactcctccacttgactttcaaaatgcttctttttagattccagttccttcagttggccttcaaattctctctcttttgattcatgctcc 179  Q
    ||||||||||| |||||||||    ||||| |||||||||  |||| ||||||  |||||||    ||||||||||||  |||| ||||| ||||||||     
T  33560458 ttttgatttgagctcctccaccatgctttcgaaatgcttcgctttatattccatctccttcacacagccttcaaattccttctcctttgactcatgctca 33560359  T
Q  180 ttcacctggacttcatgttgcttctcttttgactcaaactccttc 224  Q
    ||||   || ||||| |||||||||||||||||| || |||||||    
T  33560358 ttcaatcggccttcaagttgcttctcttttgactgaagctccttc 33560314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 214
Target Start/End: Complemental strand, 33560277 - 33560198
Alignment:
Q  135 tccttcagttggccttcaaattctctctcttttgattcatgctccttcacctggacttcatgttgcttctcttttgactc 214  Q
    ||||||| ||||  |||||| ||  ||||||||||||||  |||||||||| || ||||||||||| |||||||||||||    
T  33560277 tccttcatttggttttcaaaatccttctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactc 33560198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 33560588 - 33560523
Alignment:
Q  76 tctcttttgatttgaactcctccacttgactttcaaaatgcttctttttagattccagttccttca 141  Q
    |||||||||| |  |||||||  ||||| |||||||| || ||||||||||||||||| |||||||    
T  33560588 tctcttttgactcaaactccttaacttgtctttcaaagtggttctttttagattccagctccttca 33560523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 409
Target Start/End: Complemental strand, 17059317 - 17059281
Alignment:
Q  373 ttttagattccagctcctgcactcggccttcaaattc 409  Q
    |||||||||||||||||| |||| |||||||||||||    
T  17059317 ttttagattccagctccttcactaggccttcaaattc 17059281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 130
Target Start/End: Complemental strand, 16113303 - 16113176
Alignment:
Q  3 ttgagctccttcgcctttgctttgaacttattctcttttaactcaagttcactccatcgtccttctaattgcttctcttttgatttgaactcctccactt 102  Q
    |||||||||||| ||||| ||||||||| |||||||||| | || |||||  |||| ||| |||| |||||||| || ||||||||||| | ||| ||||    
T  16113303 ttgagctccttctcctttactttgaactgattctcttttgattcgagttctttccaccgttcttcaaattgcttatcgtttgatttgaaatactcaactt 16113204  T
Q  103 gactttcaaaatgcttctttttagattc 130  Q
    | ||||| |||||||| ||||| |||||    
T  16113203 ggctttccaaatgcttattttttgattc 16113176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 51575014 - 51574951
Alignment:
Q  60 cgtccttctaattgcttctcttttgatttgaactcctccacttgactttcaaaatgcttctttt 123  Q
    |||||||| ||||| ||||||||||||||||  |||| |||||| |||||||||||||||||||    
T  51575014 cgtccttcaaattgtttctcttttgatttgagttccttcacttggctttcaaaatgcttctttt 51574951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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