View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11738_low_1 (Length: 714)
Name: NF11738_low_1
Description: NF11738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11738_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 136 - 420
Target Start/End: Complemental strand, 49297479 - 49297199
Alignment:
| Q |
136 |
caacctcattttgttagataatctacaagttctggaggaagtaagagatgcggctaacatcaagaagtatgccacaaagcttaaagcttccaaaaaa-ta |
234 |
Q |
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| T |
49297479 |
caacctcattttgttagataatctacaagttctggaggaagtaagagatgcggctaacatcaagaagtatgccacaaagcttaaagcttccaaaaaaata |
49297380 |
T |
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| Q |
235 |
caactcaaagttaatgctgagaaggatgcaaaataatgatatggttttgaaaaggataactagaccatcacaaactagcaagttatacttgaaaattaaa |
334 |
Q |
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| T |
49297379 |
caactcaaagttaatgctgagaaggatgcaaaataatgatatggttttgaaaaggataactagaccatcacaaactagcaagttatacttga-----aaa |
49297285 |
T |
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| Q |
335 |
ggaaaggcccgtatagctcatatcaggagcctagatgctggataatttaagcagagaacttctactcagattatagtaaaacatat |
420 |
Q |
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| T |
49297284 |
ggaaaggcccgtatagctcatatcaggagcctagatgctggataatttaagcagagaacttttactcagattatagtaaaacatat |
49297199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 577 - 699
Target Start/End: Complemental strand, 49297184 - 49297062
Alignment:
| Q |
577 |
aaaagctcccccaacattaaaagggatccaagccctacaagaaatgtgacccctttaaatgaaggggcacaaactgaacaataaattctctccatatata |
676 |
Q |
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| T |
49297184 |
aaaagctcccccaacattaaaagggatccaagccctacaagaaatgtgacccctttaaatgaaggggcacaaactgaacaataaattctctccatatata |
49297085 |
T |
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| Q |
677 |
aaaaaggatatgagccatgcaag |
699 |
Q |
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| T |
49297084 |
aaaaaggatatgagtcatgcaag |
49297062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 49297995 - 49297857
Alignment:
| Q |
1 |
ctcatcatttgagaacatatgatatgatccacatctagtggcaaacgtggggaaaggatggcgatgattcaaatggcaagcaataagtttcctcgacaag |
100 |
Q |
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|||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49297995 |
ctcatcatttgagaacatatgatacgatccacatccagtggcaaacgtgaagaaaggatggcgatgattcaaatggcaagcaataagtttcctcgacaag |
49297896 |
T |
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| Q |
101 |
tgcaaatacgtagaaacttcgttgagacacgctttcaac |
139 |
Q |
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| T |
49297895 |
tgcaaatacgtagaaacttcggtgagacacgctttcaac |
49297857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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