View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11738_low_12 (Length: 261)

Name: NF11738_low_12
Description: NF11738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11738_low_12
NF11738_low_12
[»] chr7 (11 HSPs)
chr7 (1-242)||(22554637-22554878)
chr7 (18-93)||(19225460-19225535)
chr7 (6-82)||(3936318-3936394)
chr7 (19-92)||(37398754-37398827)
chr7 (22-83)||(47239561-47239622)
chr7 (28-75)||(16983613-16983660)
chr7 (19-93)||(8155122-8155196)
chr7 (19-93)||(36408594-36408668)
chr7 (20-93)||(36629427-36629500)
chr7 (24-72)||(5405059-5405107)
chr7 (148-188)||(6840530-6840570)
[»] scaffold0027 (1 HSPs)
scaffold0027 (6-93)||(141826-141913)
[»] chr4 (15 HSPs)
chr4 (6-93)||(53893888-53893974)
chr4 (1-93)||(34973077-34973169)
chr4 (6-93)||(17932999-17933086)
chr4 (19-86)||(25752312-25752379)
chr4 (6-93)||(32442028-32442115)
chr4 (6-93)||(48318926-48319013)
chr4 (6-93)||(54631354-54631441)
chr4 (6-91)||(25538842-25538927)
chr4 (17-86)||(47456829-47456898)
chr4 (19-91)||(41412962-41413034)
chr4 (6-86)||(49001429-49001509)
chr4 (6-93)||(40703882-40703969)
chr4 (1-86)||(46381041-46381122)
chr4 (150-186)||(16871799-16871835)
chr4 (6-86)||(55052487-55052567)
[»] chr8 (9 HSPs)
chr8 (6-92)||(36980779-36980865)
chr8 (19-93)||(31519754-31519828)
chr8 (19-92)||(40328120-40328193)
chr8 (6-93)||(11698178-11698265)
chr8 (6-93)||(27927803-27927890)
chr8 (6-85)||(42280761-42280840)
chr8 (19-73)||(21004607-21004661)
chr8 (1-86)||(6395289-6395374)
chr8 (4-92)||(17119742-17119830)
[»] scaffold0010 (1 HSPs)
scaffold0010 (19-92)||(140708-140781)
[»] chr5 (17 HSPs)
chr5 (22-86)||(33901147-33901211)
chr5 (19-93)||(15957934-15958008)
chr5 (19-92)||(12464982-12465055)
chr5 (6-93)||(38871843-38871930)
chr5 (19-93)||(14112050-14112124)
chr5 (16-82)||(20891795-20891861)
chr5 (19-93)||(37183643-37183717)
chr5 (22-86)||(26622298-26622362)
chr5 (29-92)||(5247360-5247423)
chr5 (18-93)||(38692645-38692720)
chr5 (19-85)||(26190192-26190258)
chr5 (38-92)||(27158288-27158342)
chr5 (149-186)||(6643510-6643547)
chr5 (6-91)||(27212876-27212961)
chr5 (6-86)||(4064588-4064668)
chr5 (132-168)||(28997342-28997378)
chr5 (28-72)||(41639373-41639417)
[»] chr1 (13 HSPs)
chr1 (6-93)||(23442948-23443035)
chr1 (6-93)||(33611272-33611359)
chr1 (148-198)||(28665125-28665175)
chr1 (19-93)||(52744705-52744779)
chr1 (23-72)||(50815681-50815730)
chr1 (19-91)||(6223615-6223687)
chr1 (6-86)||(18583413-18583493)
chr1 (22-93)||(25563276-25563347)
chr1 (148-186)||(9168368-9168406)
chr1 (19-93)||(34006484-34006558)
chr1 (19-93)||(41584527-41584601)
chr1 (148-188)||(6696161-6696201)
chr1 (6-86)||(17000589-17000669)
[»] chr3 (12 HSPs)
chr3 (19-93)||(46622657-46622731)
chr3 (19-92)||(40062602-40062675)
chr3 (6-93)||(3938392-3938479)
chr3 (19-93)||(3902668-3902742)
chr3 (19-93)||(52777454-52777528)
chr3 (19-92)||(40062235-40062308)
chr3 (19-92)||(50716476-50716549)
chr3 (19-92)||(50796298-50796371)
chr3 (6-93)||(2358484-2358571)
chr3 (6-93)||(34821205-34821292)
chr3 (19-93)||(28873229-28873303)
chr3 (6-75)||(43472849-43472918)
[»] chr2 (9 HSPs)
chr2 (19-93)||(38308689-38308763)
chr2 (19-93)||(15994970-15995044)
chr2 (19-92)||(39447385-39447458)
chr2 (147-186)||(29408968-29409007)
chr2 (6-92)||(30763859-30763945)
chr2 (6-92)||(41854762-41854848)
chr2 (19-92)||(5507642-5507715)
chr2 (24-72)||(13704690-13704738)
chr2 (19-87)||(45293863-45293931)
[»] chr6 (7 HSPs)
chr6 (6-91)||(5699776-5699861)
chr6 (6-92)||(2813087-2813173)
chr6 (19-93)||(3717144-3717218)
chr6 (6-92)||(21514894-21514980)
chr6 (19-94)||(34528663-34528738)
chr6 (25-73)||(6704009-6704057)
chr6 (150-186)||(33423902-33423938)
[»] scaffold0508 (1 HSPs)
scaffold0508 (28-92)||(3257-3321)
[»] scaffold0137 (1 HSPs)
scaffold0137 (19-86)||(9366-9433)
[»] scaffold0006 (1 HSPs)
scaffold0006 (19-72)||(59853-59906)


Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 22554878 - 22554637
Alignment:
Q  1 ttagatcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaatcttttgt 100  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||| |||||||    
T  22554878 ttaggtcattgttgactattcttagttaaaaatctgattttcagactaattgatcaaatttctctgaaatttccccagaaaatcaggaaaaaccttttgt 22554779  T
Q  101 actaagaatgtcattctaattctaataaaaccttaatagttttgtgttattctctctttgtctattttgtatctgtattgttaacagttgtaaacatgga 200  Q
    ||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22554778 actaagaatgtcattctaactctaataaaagcttaatggttttgtgttattctctctttgtctattttgtatctgtattgttaacacttgtaaacatgga 22554679  T
Q  201 aaatacgtggaaaaaccatatggttgacgatcatcacattga 242  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  22554678 aaatacgtggaaaaaccatatggttgacgatcatcacattga 22554637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 19225535 - 19225460
Alignment:
Q  18 attcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    ||||||||||||||||| | ||||| ||||| |||||| |||| ||| |||||||||| |||||||||| ||||||    
T  19225535 attcttagtcaaaaatcaggttttcggactatttgatcggattgctccgaaacttccccagaaaatcagaaaaaat 19225460  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 3936318 - 3936394
Alignment:
Q  6 tcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaa 82  Q
    ||||||||  ||||||||||||||||||| ||||||| ||||  |||||| |||| ||| |||||||||| ||||||    
T  3936318 tcattgttacctattcttagtcaaaaatcggattttcggactgcttgatcggattgctccgaaacttccccagaaaa 3936394  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 37398827 - 37398754
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaa 92  Q
    |||||||| ||||||  | |||| || ||| ||||||||||| ||| |||||||||| ||||||||||||||||    
T  37398827 ttcttagtaaaaaattcggtttttaggctacttgatcagattgctccgaaacttccctagaaaatcaggaaaaa 37398754  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 47239622 - 47239561
Alignment:
Q  22 ttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaat 83  Q
    ||||||||||||||||||||| || || ||||||||||| ||| |||||||||  |||||||    
T  47239622 ttagtcaaaaatctgattttcggagtacttgatcagattgctccgaaacttccacagaaaat 47239561  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 16983660 - 16983613
Alignment:
Q  28 aaaaatctgattttcagactaattgatcagatttctctgaaacttccc 75  Q
    ||||||||| ||||||| ||| ||||||||||| ||||||||||||||    
T  16983660 aaaaatctggttttcaggctacttgatcagattgctctgaaacttccc 16983613  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 8155122 - 8155196
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    |||||||||||||||| | ||||| ||||| ||||||  |||  ||||||||||||| | |||||||| ||||||    
T  8155122 ttcttagtcaaaaatcgggttttcggactacttgatcgaattgttctgaaacttcccaaaaaaatcagaaaaaat 8155196  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 36408594 - 36408668
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    ||||||||||||||| || ||||| ||||| |||||| |||| ||| |||||||| | | |||||||| ||||||    
T  36408594 ttcttagtcaaaaatttggttttcggactacttgatcggattgctccgaaacttctccaaaaaatcagaaaaaat 36408668  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 36629427 - 36629500
Alignment:
Q  20 tcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    ||||||||||||||| | ||||| | ||| |||||| |||| ||| |||||||||| | |||||||| ||||||    
T  36629427 tcttagtcaaaaatcgggttttcgggctacttgatcggattgctccgaaacttccccaaaaaatcagaaaaaat 36629500  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 5405107 - 5405059
Alignment:
Q  24 agtcaaaaatctgattttcagactaattgatcagatttctctgaaactt 72  Q
    |||||||||||||||||| || ||||||||| ||||| || ||||||||    
T  5405107 agtcaaaaatctgatttttaggctaattgatgagattgctttgaaactt 5405059  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 6840570 - 6840530
Alignment:
Q  148 tattctctctttgtctattttgtatctgtattgttaacagt 188  Q
    |||||||| ||| |||||||||||||| |||||||||||||    
T  6840570 tattctctgtttctctattttgtatctatattgttaacagt 6840530  T

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Target: scaffold0027 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 141913 - 141826
Alignment:
Q  6 tcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    |||||||||  | |||||||||||||||| | ||||||||||| |||||| |||| ||| |||||||||| |||||||||| ||||||    
T  141913 tcattgttgcatgttcttagtcaaaaatcgggttttcagactacttgatcggattgctccgaaacttccccagaaaatcagaaaaaat 141826  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 53893974 - 53893888
Alignment:
Q  6 tcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    ||||||||  || |||||||||||||||| | ||||||||||| |||||| |||| ||||||||||| ||||||||||||| ||||||    
T  53893974 tcattgttacctgttcttagtcaaaaatcgggttttcagactacttgatcggattgctctgaaactt-ccgagaaaatcagaaaaaat 53893888  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 34973077 - 34973169
Alignment:
Q  1 ttagatcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    |||| ||||||||  || |||||||||||||||| | ||||||||||| |||||| |||| |||||||||||||| | ||||| || ||||||    
T  34973077 ttaggtcattgttatctgttcttagtcaaaaatcgggttttcagactacttgatcggattgctctgaaacttccctataaaattagaaaaaat 34973169  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 17933086 - 17932999
Alignment:
Q  6 tcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    ||||||||  || |||||||| ||||||| ||||||||||| | |||||| |||| ||| |||||||| | |||||||||| ||||||    
T  17933086 tcattgttacctgttcttagtaaaaaatcagattttcagaccacttgatcggattgctccgaaacttctccagaaaatcagaaaaaat 17932999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 25752379 - 25752312
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcag 86  Q
    |||||||||||||||| | ||||| | ||| ||||||||||| ||| |||||||||| ||||||||||    
T  25752379 ttcttagtcaaaaatcgggttttcgggctacttgatcagattgctccgaaacttccccagaaaatcag 25752312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 32442028 - 32442115
Alignment:
Q  6 tcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    ||||||||  || ||||||||||||||||   ||||| | ||| |||||| |||| |||||||||||||| |||||||||| ||||||    
T  32442028 tcattgttacctgttcttagtcaaaaatcgagttttcgggctacttgatcggattgctctgaaacttccccagaaaatcagaaaaaat 32442115  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 48319013 - 48318926
Alignment:
Q  6 tcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    ||||||||  ||||||||||| ||||||| ||||||| ||||| |||||| |||| ||  |||| ||||| |||||||||| ||||||    
T  48319013 tcattgttatctattcttagtaaaaaatcggattttcggactacttgatcggattgcttcgaaatttccccagaaaatcagaaaaaat 48318926  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 54631441 - 54631354
Alignment:
Q  6 tcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    ||||||||  || |||||||||||||||| | ||||| ||||| |||||| |||| |||  ||||||||| |||||||||| ||||||    
T  54631441 tcattgttacctgttcttagtcaaaaatcgggttttcggactacttgatcggattgctccaaaacttccccagaaaatcagaaaaaat 54631354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 25538927 - 25538842
Alignment:
Q  6 tcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaa 91  Q
    ||||||||  || ||||||||||||||| || ||||||| ||| |||||  |||||||| ||||| |||| |||||||||| ||||    
T  25538927 tcattgttacctcttcttagtcaaaaatttggttttcaggctacttgattggatttctccgaaacatccccagaaaatcagaaaaa 25538842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 47456829 - 47456898
Alignment:
Q  17 tattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcag 86  Q
    |||||||||||||||||  | ||||| | ||| ||||||||||| ||| |||||||||| ||||||||||    
T  47456829 tattcttagtcaaaaattcggttttcgggctacttgatcagattgctccgaaacttccccagaaaatcag 47456898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 41413034 - 41412962
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaa 91  Q
    |||||| ||||||||||| ||||| | ||| |||||||||||  ||||||||||||| | |||||||| ||||    
T  41413034 ttcttaatcaaaaatctggttttcgggctacttgatcagattgttctgaaacttccccaaaaaatcagaaaaa 41412962  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 49001509 - 49001429
Alignment:
Q  6 tcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcag 86  Q
    |||||||| ||| ||| |||||||||||||||||||| | ||| |||||| |||| ||| |||| ||| | ||||||||||    
T  49001509 tcattgttaactgttcatagtcaaaaatctgattttcgggctacttgatcggattgctccgaaaattctccagaaaatcag 49001429  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 40703882 - 40703969
Alignment:
Q  6 tcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    ||||||||  || |||||||||||||||| | ||||  ||||| |||||| |||| ||  |||||||||| |||||||||| ||||||    
T  40703882 tcattgttatcttttcttagtcaaaaatcgggtttttggactacttgatcggattgctaagaaacttccccagaaaatcagaaaaaat 40703969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 46381122 - 46381041
Alignment:
Q  1 ttagatcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcag 86  Q
    |||||||||||||   |||||||||||||||||||| ||||| |||||   ||||||| || ||||||||||||  ||||||||||    
T  46381122 ttagatcattgttagttattcttagtcaaaaatctggttttcggacta---gatcaga-ttgtctgaaacttcctcagaaaatcag 46381041  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 16871799 - 16871835
Alignment:
Q  150 ttctctctttgtctattttgtatctgtattgttaaca 186  Q
    |||||||||| || |||||||||||||||||||||||    
T  16871799 ttctctctttctccattttgtatctgtattgttaaca 16871835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 55052567 - 55052487
Alignment:
Q  6 tcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcag 86  Q
    ||||||||  || ||||||||||||||||  |||||| | ||| |||||  |||| ||| |||||||||| ||||||||||    
T  55052567 tcattgttacctgttcttagtcaaaaatcgaattttcgggctacttgattggattgctccgaaacttccctagaaaatcag 55052487  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 92
Target Start/End: Original strand, 36980779 - 36980865
Alignment:
Q  6 tcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaa 92  Q
    ||||||||  ||||||||||||||||||| ||||||| | ||| |||||| |||| ||| |||||||||  ||||||||||||||||    
T  36980779 tcattgttagctattcttagtcaaaaatccgattttcgggctacttgatcggattgctccgaaacttccacagaaaatcaggaaaaa 36980865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 31519828 - 31519754
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    |||||||||||||||| | ||||| | ||| |||||| |||| |||||||||||||| | |||||||| ||||||    
T  31519828 ttcttagtcaaaaatcgggttttcgggctacttgatcggattgctctgaaacttccccataaaatcagaaaaaat 31519754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 40328120 - 40328193
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaa 92  Q
    |||||||||||||||| | ||||| ||||| |||||| |||| |||  ||||||||| |||||||||| |||||    
T  40328120 ttcttagtcaaaaatcgggttttcggactacttgatcggattgctccaaaacttccctagaaaatcagaaaaaa 40328193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 11698265 - 11698178
Alignment:
Q  6 tcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    ||||||||  || |||||||||||||||| | ||||| | ||| |||||| || | ||| |||||||||| |||||||||| ||||||    
T  11698265 tcattgttatctgttcttagtcaaaaatcgggttttcgggctacttgatcggaatgctccgaaacttccccagaaaatcagaaaaaat 11698178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 27927890 - 27927803
Alignment:
Q  6 tcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    ||||||||  || |||||||| ||||||  | ||||| ||||| ||||||||||| ||| |||||||||| | |||||||| ||||||    
T  27927890 tcattgttacctgttcttagttaaaaattgggttttcggactacttgatcagattgctccgaaacttccccataaaatcagaaaaaat 27927803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 42280840 - 42280761
Alignment:
Q  6 tcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatca 85  Q
    ||||||||  || |||||||||||||||| ||||||  ||||| |||||| |||| ||  |||||||||| |||||||||    
T  42280840 tcattgttacctgttcttagtcaaaaatcggatttttggactacttgatcggattacttcgaaacttccccagaaaatca 42280761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 21004607 - 21004661
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttc 73  Q
    |||||||||||||||| | ||||| | ||| ||||||||||| ||||||||||||    
T  21004607 ttcttagtcaaaaatcgggttttccggctacttgatcagattgctctgaaacttc 21004661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 6395289 - 6395374
Alignment:
Q  1 ttagatcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcag 86  Q
    |||| ||||||||  || ||| |||||||||||||||||||| | ||| |||||| ||||  |||||||| ||||  |||||||||    
T  6395289 ttaggtcattgttagctgttcgtagtcaaaaatctgattttcgggctacttgatcggattgttctgaaacatcccctgaaaatcag 6395374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 17119830 - 17119742
Alignment:
Q  4 gatcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaa 92  Q
    ||||||||||  || |||||||||||||| | | ||||| ||||| |||||  |||||||| |||||||||| || |||| || |||||    
T  17119830 gatcattgttacctgttcttagtcaaaaaccgggttttcggactacttgattggatttctccgaaacttccccaggaaattagaaaaaa 17119742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 140708 - 140781
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaa 92  Q
    |||||||||||||||| | ||||||||||| |||||| |||| ||| |||||||||| |||||||||| |||||    
T  140708 ttcttagtcaaaaatcgggttttcagactacttgatcggattgctccgaaacttccccagaaaatcagaaaaaa 140781  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 33901147 - 33901211
Alignment:
Q  22 ttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcag 86  Q
    |||||||||||| |||||||||||||| ||||||||||| ||| ||||||||||  |||||||||    
T  33901147 ttagtcaaaaatttgattttcagactatttgatcagattgctccgaaacttccctcgaaaatcag 33901211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 15957934 - 15958008
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    |||||||||||||||| | ||||| ||||| |||||| |||| ||| |||||||||| |||||||||| ||||||    
T  15957934 ttcttagtcaaaaatcaggttttcggactacttgatcggattgctccgaaacttccccagaaaatcagaaaaaat 15958008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 12465055 - 12464982
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaa 92  Q
    |||||||||||||||| | ||||||||||| |||||| |||| |||||||||| ||| | |||||||| |||||    
T  12465055 ttcttagtcaaaaatcgggttttcagactacttgatcggattgctctgaaactaccccaaaaaatcagaaaaaa 12464982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 38871843 - 38871930
Alignment:
Q  6 tcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    ||||||||  || |||||||||||||||| | ||||||||||| || ||| |||| ||| ||||||| || |||||||||| ||||||    
T  38871843 tcattgttacctgttcttagtcaaaaatcgggttttcagactacttaatcggattgctccgaaactttcccagaaaatcagaaaaaat 38871930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 14112050 - 14112124
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    |||||||||||||||| | ||||| ||||| |||||  |||| ||| |||||||||| |||||||||| ||||||    
T  14112050 ttcttagtcaaaaatcgggttttcggactacttgataggattgctccgaaacttccccagaaaatcagaaaaaat 14112124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 20891795 - 20891861
Alignment:
Q  16 ctattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaa 82  Q
    ||||||||||||||||||| | ||||||| ||| |||||| |||| ||| |||||||||| ||||||    
T  20891795 ctattcttagtcaaaaatcgggttttcaggctacttgatcggattgctccgaaacttccccagaaaa 20891861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 37183717 - 37183643
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    |||||||||||||||| | ||||||||||| |||||| |||| ||| ||||| |||| | |||||||| ||||||    
T  37183717 ttcttagtcaaaaatcgggttttcagactacttgatcggattgctccgaaacatccccataaaatcagaaaaaat 37183643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 26622298 - 26622362
Alignment:
Q  22 ttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcag 86  Q
    ||||||||||||| | ||||| ||||| ||||||||||| ||| |||||||||  ||||||||||    
T  26622298 ttagtcaaaaatccggttttcggactacttgatcagattgctccgaaacttcctcagaaaatcag 26622362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 5247423 - 5247360
Alignment:
Q  29 aaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaa 92  Q
    ||||| ||||||||||| || ||||||| ||| |||||||||||  | ||||||||||||||||    
T  5247423 aaaatttgattttcagaatacttgatcatattgctctgaaactttaccagaaaatcaggaaaaa 5247360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 38692720 - 38692645
Alignment:
Q  18 attcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    ||||||||||||||||| | ||||| ||||| ||| || |||| ||| |||||||||| | |||||||| ||||||    
T  38692720 attcttagtcaaaaatcgggttttcggactacttggtcggattgctccgaaacttccccaaaaaatcagaaaaaat 38692645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 26190258 - 26190192
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatca 85  Q
    |||||||||||||||| | ||||| ||||| | |||| |||| |||||||||||||| | |||||||    
T  26190258 ttcttagtcaaaaatcgggttttcggactactagatcggattgctctgaaacttccccaaaaaatca 26190192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 27158288 - 27158342
Alignment:
Q  38 ttttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaa 92  Q
    ||||||| ||| ||||||||||| ||| ||||||| || ||||||||||||||||    
T  27158288 ttttcaggctacttgatcagattgctccgaaactttcccagaaaatcaggaaaaa 27158342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 6643510 - 6643547
Alignment:
Q  149 attctctctttgtctattttgtatctgtattgttaaca 186  Q
    |||||||| || ||||||||||||||||||||||||||    
T  6643510 attctctcattttctattttgtatctgtattgttaaca 6643547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 27212876 - 27212961
Alignment:
Q  6 tcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaa 91  Q
    ||||||||  || |||||||||||||||| | ||||| ||||| |||||  |||| ||| || ||||||| |||||||||| ||||    
T  27212876 tcattgttacctgttcttagtcaaaaatcgggttttcggactatttgattggattgctccgatacttccctagaaaatcagaaaaa 27212961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 4064668 - 4064588
Alignment:
Q  6 tcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcag 86  Q
    ||||||||  || ||||||||||||||||  |||||| | ||| |||||  |||| ||| |||||||||| ||||||||||    
T  4064668 tcattgttacctgttcttagtcaaaaatcgaattttcgggctacttgattggattgctccgaaacttccccagaaaatcag 4064588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 28997342 - 28997378
Alignment:
Q  132 cttaatagttttgtgttattctctctttgtctatttt 168  Q
    |||||| |||||||||||||| |||||||||||||||    
T  28997342 cttaatcgttttgtgttattcactctttgtctatttt 28997378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 41639417 - 41639373
Alignment:
Q  28 aaaaatctgattttcagactaattgatcagatttctctgaaactt 72  Q
    ||||||||||||||||| ||| ||||||||||| || ||||||||    
T  41639417 aaaaatctgattttcaggctacttgatcagattactttgaaactt 41639373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 23442948 - 23443035
Alignment:
Q  6 tcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    ||||||||  || |||||||||||||||| | ||||| ||||| |||||| |||| |||||||||||||| | |||||||| ||||||    
T  23442948 tcattgttacctgttcttagtcaaaaatcgggttttcggactacttgatcggattgctctgaaacttccccaaaaaatcagaaaaaat 23443035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 33611359 - 33611272
Alignment:
Q  6 tcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    ||||||||  || |||||||||||||||| | ||||| | ||| |||||| |||| |||||||||||||| | |||||||| ||||||    
T  33611359 tcattgttacctgttcttagtcaaaaatcgggttttcgggctacttgatcggattgctctgaaacttccccaaaaaatcagaaaaaat 33611272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 28665125 - 28665175
Alignment:
Q  148 tattctctctttgtctattttgtatctgtattgttaacagttgtaaacatg 198  Q
    |||||||||||| || |||||||||||||||| ||||||||| ||||||||    
T  28665125 tattctctctttctccattttgtatctgtattcttaacagttctaaacatg 28665175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 52744779 - 52744705
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    |||||||||||||||  | ||||| ||||| |||||| |||| ||| |||||||||| |||||||||| ||||||    
T  52744779 ttcttagtcaaaaattgggttttcggactacttgatcggattgctccgaaacttccccagaaaatcagaaaaaat 52744705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 50815730 - 50815681
Alignment:
Q  23 tagtcaaaaatctgattttcagactaattgatcagatttctctgaaactt 72  Q
    ||||| |||||||||||||||||||| |||||||||||  ||||||||||    
T  50815730 tagtcgaaaatctgattttcagactatttgatcagattgttctgaaactt 50815681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 6223687 - 6223615
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaa 91  Q
    |||||||||||||||| | ||||| | ||| |||||| |||| ||||||||||| || |||||||||| ||||    
T  6223687 ttcttagtcaaaaatcgggttttcgggctacttgatcggattgctctgaaactttcccagaaaatcagaaaaa 6223615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 18583493 - 18583413
Alignment:
Q  6 tcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcag 86  Q
    ||||||||  || |||||||||||||||| | ||||| | ||| |||||| |||| |||||||||||||| | ||||||||    
T  18583493 tcattgttacctgttcttagtcaaaaatcgggttttcgggctacttgatcggattgctctgaaacttccccaaaaaatcag 18583413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 25563347 - 25563276
Alignment:
Q  22 ttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    ||||||||||||| ||| |||   ||| |||||| |||| ||| |||||||||| |||||||||||||||||    
T  25563347 ttagtcaaaaatccgatattcgagctacttgatcggattgctccgaaacttcccaagaaaatcaggaaaaat 25563276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 186
Target Start/End: Complemental strand, 9168406 - 9168368
Alignment:
Q  148 tattctctctttgtctattttgtatctgtattgttaaca 186  Q
    |||||||||||| |||||||||||| |||||||||||||    
T  9168406 tattctctctttctctattttgtatatgtattgttaaca 9168368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 34006484 - 34006558
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    |||||||||||||||  | ||||| | ||| |||||| |||| ||| |||||||||| |||||||||| ||||||    
T  34006484 ttcttagtcaaaaattaggttttcgggctacttgatcggattgctccgaaacttccccagaaaatcagaaaaaat 34006558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 41584601 - 41584527
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    |||||||||||||||| | ||||| | ||| |||||| |||| ||| ||||||| || |||||||||| ||||||    
T  41584601 ttcttagtcaaaaatcgggttttcgggctacttgatcggattgctccgaaacttgcccagaaaatcagaaaaaat 41584527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 6696161 - 6696201
Alignment:
Q  148 tattctctctttgtctattttgtatctgtattgttaacagt 188  Q
    |||||||||||| || ||||| |||||||||||||||||||    
T  6696161 tattctctctttctccattttatatctgtattgttaacagt 6696201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 17000589 - 17000669
Alignment:
Q  6 tcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcag 86  Q
    ||||||||  || ||||||||||||||||  |||||| | ||| |||||  |||| ||| |||||||||| ||||||||||    
T  17000589 tcattgttacctgttcttagtcaaaaatcgaattttcgggctacttgattggattgctccgaaacttccccagaaaatcag 17000669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 46622731 - 46622657
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    |||||||||||||||| ||||||| ||||| |||||| |||| ||| ||||||| || |||||||||| ||||||    
T  46622731 ttcttagtcaaaaatcggattttcggactacttgatcggattgctccgaaactttcccagaaaatcagaaaaaat 46622657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 40062602 - 40062675
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaa 92  Q
    |||||||||||||||||| ||||| | ||| ||||||||||| | | |||| ||||| ||||||||||||||||    
T  40062602 ttcttagtcaaaaatctggttttcgggctacttgatcagattgcaccgaaatttccctagaaaatcaggaaaaa 40062675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 3938392 - 3938479
Alignment:
Q  6 tcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    ||||||||  || |||||||||||||||||| ||||| |  || |||||| |||| |||||||||||||| | |||||||| ||||||    
T  3938392 tcattgttacctgttcttagtcaaaaatctggttttcgggttacttgatcggattgctctgaaacttccccaaaaaatcagaaaaaat 3938479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 3902742 - 3902668
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    |||||||||||||||| | |||||||| || |||||| |||| ||| ||||||| || |||||||||| ||||||    
T  3902742 ttcttagtcaaaaatcgggttttcagattacttgatcggattgctcggaaacttgcccagaaaatcagaaaaaat 3902668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 52777454 - 52777528
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    |||||||||||||||| | ||||| | ||| |||||| |||| |||||||||||||| | |||||||| ||||||    
T  52777454 ttcttagtcaaaaatcgggttttcgggctacttgatcggattgctctgaaacttccccaaaaaatcagaaaaaat 52777528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 40062308 - 40062235
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaa 92  Q
    |||||| ||||||||| |||||||||  || ||||||||||| | | |||| ||||| ||||||||||||||||    
T  40062308 ttcttaatcaaaaatccgattttcaggttacttgatcagattgcaccgaaatttccctagaaaatcaggaaaaa 40062235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 50716476 - 50716549
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaa 92  Q
    |||||||||||||||| | ||||| | ||| |||||| |||| ||| |||||||||| |||||||||| |||||    
T  50716476 ttcttagtcaaaaatcgggttttcgggctacttgatcggattgctccgaaacttccccagaaaatcagaaaaaa 50716549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 50796371 - 50796298
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaa 92  Q
    |||||||||||||||| | ||||| | ||| |||||| |||| ||| |||||||||| |||||||||| |||||    
T  50796371 ttcttagtcaaaaatcgggttttcgggctacttgatcggattgctccgaaacttccccagaaaatcagaaaaaa 50796298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 2358571 - 2358484
Alignment:
Q  6 tcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    |||||||||  |||||||||||||||||| | ||||  | ||| ||||||  ||| |||||||||||||| | |||||||| ||||||    
T  2358571 tcattgttgcatattcttagtcaaaaatcgggtttttgggctacttgatcgaattgctctgaaacttccccaaaaaatcagaaaaaat 2358484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 34821292 - 34821205
Alignment:
Q  6 tcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    ||||||||  || |||||||| ||||| | | ||||||| ||| |||||| |||  |||||||||||||| |||||||||| ||||||    
T  34821292 tcattgttacctgttcttagttaaaaagcgggttttcaggctacttgatcggatcgctctgaaacttccccagaaaatcagaaaaaat 34821205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 28873229 - 28873303
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    |||||||||||||||| | ||||| | ||| |||||| |||| ||| |||||||||| ||||||| || ||||||    
T  28873229 ttcttagtcaaaaatcgggttttcgggctacttgatcggattgctccgaaacttccccagaaaattagaaaaaat 28873303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 43472918 - 43472849
Alignment:
Q  6 tcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttccc 75  Q
    ||||||||  || |||||||||||||||| | ||||| | ||| |||||| |||| ||||||||||||||    
T  43472918 tcattgttatctgttcttagtcaaaaatcgggttttcgggctacttgatcggattactctgaaacttccc 43472849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 38308763 - 38308689
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    |||||||||||||||| |  |||| | ||| ||||||||||| |||||||||||||| |||||||||| ||||||    
T  38308763 ttcttagtcaaaaatcgggatttcgggctacttgatcagattgctctgaaacttccccagaaaatcagaaaaaat 38308689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 15995044 - 15994970
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    |||||||| ||||||  ||||||||||||| |||||| |||| ||| |||||||||| | |||||||| ||||||    
T  15995044 ttcttagtaaaaaattggattttcagactatttgatcggattgctccgaaacttccccataaaatcagaaaaaat 15994970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 39447385 - 39447458
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaa 92  Q
    |||||||||||||||| | | ||| ||||  |||||| |||| |||||||||||||| |||||||||| |||||    
T  39447385 ttcttagtcaaaaatcgggtcttccgactgcttgatcggattgctctgaaacttccctagaaaatcagaaaaaa 39447458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 186
Target Start/End: Complemental strand, 29409007 - 29408968
Alignment:
Q  147 ttattctctctttgtctattttgtatctgtattgttaaca 186  Q
    ||||||||||||| |||||||||||| |||||||||||||    
T  29409007 ttattctctctttctctattttgtatatgtattgttaaca 29408968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 92
Target Start/End: Original strand, 30763859 - 30763945
Alignment:
Q  6 tcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaa 92  Q
    ||||||||  || |||||||||||||||||||||||  | | | |||||| |||| ||| |||||||||  |||||||||| |||||    
T  30763859 tcattgttagctgttcttagtcaaaaatctgatttttgggcaacttgatcggattgctccgaaacttcctcagaaaatcagaaaaaa 30763945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 41854848 - 41854762
Alignment:
Q  6 tcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaa 92  Q
    ||||||||  || |||||||| ||||| | ||||||  | ||| |||||| |||| |||||||||||||| |||||||||| |||||    
T  41854848 tcattgttatctgttcttagttaaaaaccggatttttgggctacttgatcggattgctctgaaacttccccagaaaatcagaaaaaa 41854762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 5507642 - 5507715
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaa 92  Q
    |||||||||||||||| | ||||| | | | |||||| |||| ||| |||||||||| |||||||||| |||||    
T  5507642 ttcttagtcaaaaatcaggttttcgggcaacttgatcggattgctccgaaacttccccagaaaatcagaaaaaa 5507715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 13704738 - 13704690
Alignment:
Q  24 agtcaaaaatctgattttcagactaattgatcagatttctctgaaactt 72  Q
    ||||||||||| ||||||| | ||| ||||||||||| |||||||||||    
T  13704738 agtcaaaaatccgattttcgggctacttgatcagattgctctgaaactt 13704690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 45293863 - 45293931
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcagg 87  Q
    |||||||||||||||| | ||||| | ||| ||||||| ||| ||||||||||| || | |||||||||    
T  45293863 ttcttagtcaaaaatccggttttcgggctacttgatcatattgctctgaaactttcccataaaatcagg 45293931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 5699776 - 5699861
Alignment:
Q  6 tcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaa 91  Q
    ||||||||  ||||||||||||||||||| |  |||| ||||| |||||| |||| ||| |||||||||| |||||||||| ||||    
T  5699776 tcattgttacctattcttagtcaaaaatcgggatttcggactacttgatcggattgctccgaaacttccccagaaaatcagaaaaa 5699861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 2813173 - 2813087
Alignment:
Q  6 tcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaa 92  Q
    ||||||||  || |||||||||||||||| | ||||| | ||| |||||| |||| ||| |||||||||| |||||||||| |||||    
T  2813173 tcattgttacctgttcttagtcaaaaatcgggttttcgggctacttgatcggattgctccgaaacttccccagaaaatcagaaaaaa 2813087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 3717218 - 3717144
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaat 93  Q
    |||||||||||||||| | ||||||||||| |||||| |||| ||| ||||| |||| | |||||||| ||||||    
T  3717218 ttcttagtcaaaaatcgggttttcagactacttgatcggattgctccgaaacatccccaaaaaatcagaaaaaat 3717144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 21514980 - 21514894
Alignment:
Q  6 tcattgttgactattcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaa 92  Q
    ||||||||  || |||||||||||||||| ||||||| ||||| |||||| |||| ||| |||||||||| | ||||| || |||||    
T  21514980 tcattgttacctgttcttagtcaaaaatcggattttcggactacttgatcggattgctccgaaacttccccataaaattagaaaaaa 21514894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 34528663 - 34528738
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaatc 94  Q
    |||||||||||||||||| ||||| | ||| |||||| |||| |||  ||||||||  | ||||||||||||||||    
T  34528663 ttcttagtcaaaaatctggttttcggtctacttgatcggattgctccaaaacttcctcataaaatcaggaaaaatc 34528738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 6704057 - 6704009
Alignment:
Q  25 gtcaaaaatctgattttcagactaattgatcagatttctctgaaacttc 73  Q
    |||||||||| | ||||| ||||| ||||||||||| ||||||||||||    
T  6704057 gtcaaaaatccggttttcggactatttgatcagattgctctgaaacttc 6704009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 33423938 - 33423902
Alignment:
Q  150 ttctctctttgtctattttgtatctgtattgttaaca 186  Q
    |||||||||| |||||||||||||| |||||||||||    
T  33423938 ttctctctttctctattttgtatctatattgttaaca 33423902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 3321 - 3257
Alignment:
Q  28 aaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcaggaaaaa 92  Q
    ||||||| | ||||| | ||| ||||||||||| |||||||||||||| |||||||||| |||||    
T  3321 aaaaatcaggttttcgggctacttgatcagattgctctgaaacttccccagaaaatcagaaaaaa 3257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 9433 - 9366
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaacttcccgagaaaatcag 86  Q
    |||||||| ||||||| ||||||| || || |||||| |||| ||||||||||| || ||||||||||    
T  9433 ttcttagttaaaaatcggattttcggattacttgatcggattgctctgaaacttgcctagaaaatcag 9366  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 59906 - 59853
Alignment:
Q  19 ttcttagtcaaaaatctgattttcagactaattgatcagatttctctgaaactt 72  Q
    ||||||||||||||| |||||||| |  || ||||||||||||||| |||||||    
T  59906 ttcttagtcaaaaatttgattttcgggttacttgatcagatttctccgaaactt 59853  T

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