View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11738_low_14 (Length: 229)
Name: NF11738_low_14
Description: NF11738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11738_low_14 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 2096644 - 2096863
Alignment:
| Q |
7 |
atatttgcagttatggtttcagtttcacagggatggcctactctagttactgattttaagattgaaacaaatttgttgatttagattactagagttttga |
106 |
Q |
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| T |
2096644 |
atatttgcagttatggtttcagtttcac-----tgacctactatagttactgattttaagattgaaacaaatttgttgatttggattactagagttttga |
2096738 |
T |
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| Q |
107 |
ttaaatgtatgtatgcat--atatgtatatacttctgtccctgcaaatgacaaaaagagctttaaatgaatgtagcttatcaaggaaatcagtgttgaac |
204 |
Q |
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| T |
2096739 |
ttaaatgtatgtatgcatgtatatgtatatacttctgtccctgcaaatgacaaatagagctttaaatgaatgcagcttatcaaggaaatcggtgttgaac |
2096838 |
T |
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| Q |
205 |
ttaaccaacatacttggccatctaa |
229 |
Q |
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| T |
2096839 |
ttaaccaacatacttggccatctaa |
2096863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 1562288 - 1562335
Alignment:
| Q |
173 |
aatgtagcttatcaaggaaatcagtgttgaacttaaccaacatacttg |
220 |
Q |
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| T |
1562288 |
aatgcagcttatcaaggaaaccaatgttgaacttaaccaacatacttg |
1562335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 2092747 - 2092798
Alignment:
| Q |
173 |
aatgtagcttatcaaggaaatcagtgttgaacttaaccaacatacttggcca |
224 |
Q |
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| T |
2092747 |
aatgcagcttgttaaggaaaccaatgttgaacttaaccaacatacttggcca |
2092798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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