View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11738_low_15 (Length: 226)
Name: NF11738_low_15
Description: NF11738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11738_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 32316361 - 32316559
Alignment:
| Q |
12 |
cacagacacaacgttccctttttctctctatcatcattcttcacacaaatcatcttcttctaacaacaaaacaaaa-aacctcttcacacttttctcttt |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32316361 |
cacaaacacaacgttccctttttctctctatcatcattcttcacacaaatcatcttcttctaacaacaaaacaaaaaaacctcttcacacttttctcttt |
32316460 |
T |
|
| Q |
111 |
tttgtccctctgtcatggagagatacacgctaccgttaccatcgcaacaagttcacaacactctcactataccttggactgaacctcaacaacaagaat |
209 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32316461 |
tttgtctctctgtcatggagagatacacgctaccgttaccatcacaacaagttcacaacactctcactataccttggactgaacctcaacaacaagaat |
32316559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University