View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11738_low_2 (Length: 638)
Name: NF11738_low_2
Description: NF11738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11738_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 567; Significance: 0; HSPs: 24)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 7 - 617
Target Start/End: Complemental strand, 39192498 - 39191885
Alignment:
| Q |
7 |
gcaaaggcgaaggagctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcctgcgtcaaggaaaaagtatattgatgaggaaaaagaatcag |
106 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39192498 |
gcaaaggtgaaggagctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcctgcgtcaaggaaaaagtatattgatgaggaaaaagaatcag |
39192399 |
T |
|
| Q |
107 |
gtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactattcctcttaatgatgatgatattttt-ataacctgatctacttaattcttt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
39192398 |
gtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatgatgatgatattttttataacatgatctacttaattcttt |
39192299 |
T |
|
| Q |
206 |
aaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaagattttccagttttcatatcacatccacagactgt--caaactaatttcg |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39192298 |
aaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaagattttccagttttcatatcacatccacagactgtgtcaaactaatttcg |
39192199 |
T |
|
| Q |
304 |
attatcttgtcacccttgaacattacatgtatctcttaagtgaaaaaactctggtgttttttatacattgctaatgtttgattataatattatgttattg |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||| |
|
|
| T |
39192198 |
attatcttgtcacccttgaacattacatgtatctcttaagtgaaaaaactctggtgttttttatacattgctaaggttttattgtaatattatgttattg |
39192099 |
T |
|
| Q |
404 |
ccatcctaaggttagtctttaatgtagttttaatttttcaagtatattgcaaaaagggtaggttcaatattctgatagacattaaggggcacttaatagt |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39192098 |
ccatcctaaggttagtctttaatgtagttttaatttttcaagtatattgcaaaaagggtaggttcaatattctgatagacattaaggggcacttaatagt |
39191999 |
T |
|
| Q |
504 |
cctattagtgcaactatttctcgtcttatttattaatcaattaaatctaacactttctacgttgataaggtgcgtatttacattgattgtaaaatgttag |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39191998 |
cctattagtgcaactatttctcgtcttatttattaatcaattaaatctcacactttctacgttgataaggtgcgtatttacattgattgtaaaatgttag |
39191899 |
T |
|
| Q |
604 |
tatattaatgcttt |
617 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
39191898 |
tatattaatgcttt |
39191885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 7 - 560
Target Start/End: Complemental strand, 39198178 - 39197623
Alignment:
| Q |
7 |
gcaaaggcgaaggagctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcctgcgtcaaggaaaaagtatattgatgaggaaaaagaatcag |
106 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39198178 |
gcaaaggtgaaggagctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcctgcgtcaaggaaaaagtatattgatgaggaaaaagaatcag |
39198079 |
T |
|
| Q |
107 |
gtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactattcctcttaatgatgatgatattttt-ataacctgatctacttaattcttt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
39198078 |
gtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatgatgatgatattttttataacatgatctacttaattcttt |
39197979 |
T |
|
| Q |
206 |
aaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaagattttccagttttcatatcacatccacagactgtcaaactaatttcgat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39197978 |
aaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaagattttcccgttttcatttcacatccacagactgtcaaactaatttcgat |
39197879 |
T |
|
| Q |
306 |
tatcttgtcacccttgaacattacatgtatctcttaagtgaaaaaactctggtgttttttatacattgctaatgtttgattataatattatgttattgcc |
405 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
39197878 |
tatcttgtcacccttgaacattatatgtatctcttaagtgaaaaaactctggtgttttttatacattgctaagtttttattataatattatgttattgct |
39197779 |
T |
|
| Q |
406 |
atcctaaggttagtct-ttaatgtagttttaatttttcaagtatattgcaaaaagggtaggttcaatattctgatagacattaaggggcacttaatagt- |
503 |
Q |
| |
|
|| ||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
39197778 |
attgaaaggttagtatattaatgtagttttaatttttcaagtatattgcaaaaagtgtaggttcaatattctgacagacattaaggggcac-taatagtc |
39197680 |
T |
|
| Q |
504 |
cctattagtgcaactatttctcgtcttatttattaatcaattaaatctaacactttc |
560 |
Q |
| |
|
||||||||||||||||||||| |||||||| | |||||||||| ||||||||||||| |
|
|
| T |
39197679 |
cctattagtgcaactatttctagtcttattcaataatcaattagatctaacactttc |
39197623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 69 - 555
Target Start/End: Complemental strand, 39389091 - 39388604
Alignment:
| Q |
69 |
gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactattcctcttaatga |
168 |
Q |
| |
|
|||||||||||| ||| |||||| |||||||||||| ||||||||| |||||||||| |||||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
39389091 |
gtcaaggaaaaaatattttgatggggaaaaagaatccggtaaatgttcttattcatccagtttattgaaagaatttttttacaactgttcctcttaatga |
39388992 |
T |
|
| Q |
169 |
tgatgatat---ttttataacctgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaagattttccag |
265 |
Q |
| |
|
||||||||| ||||||| | ||||||||||||||| || |||| |||||||||||||||||||| ||||| |||||||||||||| | |||||||| |
|
|
| T |
39388991 |
tgatgatattttttttatagcttgatctacttaattccatagaaacgtttttaatcatgttaatgttgtatgtcatagtcaatttgaaatgcttttccag |
39388892 |
T |
|
| Q |
266 |
ttttcatatcacatccacagactgtcaaactaatttcgattatcttgtcacccttgaacattacatgtatctcttaagtgaaaaaactctggtgtttttt |
365 |
Q |
| |
|
|||||||||||| ||| ||||| || ||||||||| | ||| | ||||||||||||||| |||||||||||| |||||||||||| || |||||| |
|
|
| T |
39388891 |
atttcatatcacacccaaagactttcgaactaatttgcaatatatcctcacccttgaacattttatgtatctcttaggtgaaaaaactc--gtatttttt |
39388794 |
T |
|
| Q |
366 |
atacattgctaatgtttgattataatattatgttattgccatcctaaggttagtct-ttaatgtagttttaatttttcaagtatattgcaaaaagggtag |
464 |
Q |
| |
|
|| ||| ||||| |||| | |||||||||||| || || | ||| ||||| | |||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
39388793 |
atccatggctaaggttttactataatattatggtactgataatgaaagattagtatattaatgtaattttaatttttcaagtatattgcaaaaagtgtag |
39388694 |
T |
|
| Q |
465 |
gttcaatattctgatagacattaaggggcacttaatagtcctattagtgcaactatttctcgtcttatttattaatcaattaaatctaaca |
555 |
Q |
| |
|
|||||||||||||| | ||||| ||||||||||||||||||||| ||||| ||||||||| ||||| |||||||||||| || ||||||| |
|
|
| T |
39388693 |
gttcaatattctgaca-acattgaggggcacttaatagtcctatcagtgctactatttctagtcttgcttattaatcaatgaactctaaca |
39388604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 58 - 569
Target Start/End: Original strand, 39161920 - 39162433
Alignment:
| Q |
58 |
aaggatcctgcgtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactatt |
157 |
Q |
| |
|
||||| |||| |||||||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||| ||||||||||||||| ||| |||| || |
|
|
| T |
39161920 |
aaggagcctgagtcaaggaaaaaatatattgatgaggaaaaagaatccggtaaatgttcttcttcatctagattattgaaagaattttattataactgtt |
39162019 |
T |
|
| Q |
158 |
cctcttaatgatgatgatatttttataa-cctgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaag |
256 |
Q |
| |
|
||| |||||||||||||||||||| || |||||||||||||||| |||||| || |||||| ||||||||||||| ||||| |||||| |||||||||| |
|
|
| T |
39162020 |
ccttttaatgatgatgatattttttgaatcctgatctacttaattttttaaacacgtttttactcatgttaatgttgtatgtcttagtc-atttgaaaag |
39162118 |
T |
|
| Q |
257 |
attttccagttttcatatcacatccacagactgtcaaactaatttcgattatcttgtcacccttgaacattacatgtatctcttaagtgaaaaaactctg |
356 |
Q |
| |
|
|||||||| |||||||||||| | |||||| |||||| ||| | ||||| || | |||||||||| || ||||||||||||||||||||| ||| |
|
|
| T |
39162119 |
cttttccagatttcatatcaca--cccagactttcaaacaaatctgaattatatttttacccttgaactttttatgtatctcttaagtgaaaaacctcat |
39162216 |
T |
|
| Q |
357 |
gtgttttttatacattgctaatgtttgattataatattatgttattgccatcctaa-----ggttagtct-ttaatgtagttttaatttttcaagtatat |
450 |
Q |
| |
|
||||||||||| ||| |||| |||| |||||||||||||| || | | | |||| | ||||| | ||||||||||||||||||||||| ||||| |
|
|
| T |
39162217 |
gtgttttttatccatggctatagttttattataatattatggtactac--tgctaatgaaggattagtatattaatgtagttttaatttttcaattatat |
39162314 |
T |
|
| Q |
451 |
tgcaaaaagggtaggttcaatattctgatagacattaaggggcacttaatagtcctattagtgcaactatttctcgtcttatttattaatcaattaaatc |
550 |
Q |
| |
|
| |||||| ||| |||||||||||||| | ||||| |||| |||||||||||||||||||||||||||| | ||||| ||||||||||||| ||||| |
|
|
| T |
39162315 |
ttcaaaaactgtatgttcaatattctgacaaacattgcggggtacttaatagtcctattagtgcaactattaatagtcttgtttattaatcaatgaaatc |
39162414 |
T |
|
| Q |
551 |
taacactttctacgttgat |
569 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
39162415 |
taacactttctaccttgat |
39162433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 58 - 569
Target Start/End: Complemental strand, 39207274 - 39206761
Alignment:
| Q |
58 |
aaggatcctgcgtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactatt |
157 |
Q |
| |
|
||||| |||| |||||||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||| ||||||||||||||| ||| |||| || |
|
|
| T |
39207274 |
aaggagcctgagtcaaggaaaaaatatattgatgaggaaaaagaatccggtaaatgttcttcttcatctagattattgaaagaattttattataactgtt |
39207175 |
T |
|
| Q |
158 |
cctcttaatgatgatgatatttttataa-cctgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaag |
256 |
Q |
| |
|
||| |||||||||||||||||||| || |||||||||||||||| |||||| || |||||| ||||||||||||| ||||| |||||| |||||||||| |
|
|
| T |
39207174 |
ccttttaatgatgatgatattttttgaatcctgatctacttaattttttaaacacgtttttactcatgttaatgttgtatgtcttagtc-atttgaaaag |
39207076 |
T |
|
| Q |
257 |
attttccagttttcatatcacatccacagactgtcaaactaatttcgattatcttgtcacccttgaacattacatgtatctcttaagtgaaaaaactctg |
356 |
Q |
| |
|
|||||||| |||||||||||| | |||||| |||||| ||| | ||||| || | |||||||||| || ||||||||||||||||||||| ||| |
|
|
| T |
39207075 |
cttttccagatttcatatcaca--cccagactttcaaacaaatctgaattatatttttacccttgaactttttatgtatctcttaagtgaaaaacctcat |
39206978 |
T |
|
| Q |
357 |
gtgttttttatacattgctaatgtttgattataatattatgttattgccatcctaa-----ggttagtct-ttaatgtagttttaatttttcaagtatat |
450 |
Q |
| |
|
||||||||||| ||| |||| |||| |||||||||||||| || | | | |||| | ||||| | ||||||||||||||||||||||| ||||| |
|
|
| T |
39206977 |
gtgttttttatccatggctatagttttattataatattatggtactac--tgctaatgaaggattagtatattaatgtagttttaatttttcaattatat |
39206880 |
T |
|
| Q |
451 |
tgcaaaaagggtaggttcaatattctgatagacattaaggggcacttaatagtcctattagtgcaactatttctcgtcttatttattaatcaattaaatc |
550 |
Q |
| |
|
| |||||| ||| |||||||||||||| | ||||| |||| |||||||||||||||||||||||||||| | ||||| ||||||||||||| ||||| |
|
|
| T |
39206879 |
ttcaaaaactgtatgttcaatattctgacaaacattgcggggtacttaatagtcctattagtgcaactattaatagtcttgtttattaatcaatgaaatc |
39206780 |
T |
|
| Q |
551 |
taacactttctacgttgat |
569 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
39206779 |
taacactttctaccttgat |
39206761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 7 - 182
Target Start/End: Original strand, 39222870 - 39223045
Alignment:
| Q |
7 |
gcaaaggcgaaggagctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcctgcgtcaaggaaaaagtatattgatgaggaaaaagaatcag |
106 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||| ||||||||||| |||||||||||||| |||||||||||| |||||||||| ||||||||||| | |
|
|
| T |
39222870 |
gcaaaggtgaaggagctcaacttcaaagaaaagtggtttgaaggacaagtcaaggatcctgtgtcaaggaaaaaatatattgatggagaaaaagaatcgg |
39222969 |
T |
|
| Q |
107 |
gtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactattcctcttaatgatgatgatattttta |
182 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| |||||| || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
39222970 |
gtaaatgttcttattcatcttgtttattgaaaaaatttctttacaactgttcctcttaatgatgatgatattttta |
39223045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 69 - 555
Target Start/End: Original strand, 39215721 - 39216210
Alignment:
| Q |
69 |
gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactattcctcttaatga |
168 |
Q |
| |
|
|||||||||||| |||||||| || || | |||| ||||||||| ||||||||||| |||||||||||| ||||| | |||| ||||||||||||| |
|
|
| T |
39215721 |
gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga |
39215817 |
T |
|
| Q |
169 |
tgatgata-tttttataacctgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaagattttccagtt |
267 |
Q |
| |
|
|||||| | ||||||||||| ||||||| || || |||||||| ||||||||||||||||||||| ||||| || |||| ||| ||| ||||| |||| |
|
|
| T |
39215818 |
tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgtctttgtcatattg-aaattttttctagtt |
39215916 |
T |
|
| Q |
268 |
ttcatatcacatccacagactgtcaaactaatttcgat--tatcttgtcacccttgaacattacatgtatctcttaagtg------aaaaaactctggtg |
359 |
Q |
| |
|
||||||||||| ||||| | |||||||| ||||| || ||| || ||||||||||||||| ||| ||||||| | || ||||||||| | |
|
|
| T |
39215917 |
ttcatatcacacccacacattgtcaaacaaatttgtatggtatatt-tcacccttgaacattttatgaatctctttactgcaaaaaaaaaaactcacg-- |
39216013 |
T |
|
| Q |
360 |
ttttttatacattgctaatgtttgattataatattatgttattgccatcctaaggttagtct-ttaatgtagttttaatttttcaagtatattgcaaaaa |
458 |
Q |
| |
|
||||||| ||| ||||| |||| |||||||| ||||| || ||| | ||| ||||| | || || |||||||||||||||||||||||| |||| | |
|
|
| T |
39216014 |
-tttttattcatggctaaagtttaattataatcttatgatactgctaatgaaagattagtatattgatttagttttaatttttcaagtatatttcaaata |
39216112 |
T |
|
| Q |
459 |
gggtaggttcaatattc--tgatagacattaaggggcacttaatagtcctattagtgcaactatttctcgtcttatttattaatcaattaaatctaaca |
555 |
Q |
| |
|
| |||||||||| || | || | | ||| |||||||||||||||||| |||||||||||||||||| ||||| ||||| |||| || |||||||||| |
|
|
| T |
39216113 |
gtgtaggttcaacatccctcgaca-aaattgaggggcacttaatagtccaattagtgcaactatttctagtcttgtttatcaatcgatgaaatctaaca |
39216210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 179 - 312
Target Start/End: Original strand, 39223101 - 39223234
Alignment:
| Q |
179 |
tttataacctgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaagattttccagttttcatatcaca |
278 |
Q |
| |
|
|||| |||||||||||||||||||||||| || ||||||||||||||||||||| ||| |||||| |||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
39223101 |
tttacaacctgatctacttaattctttaagaatatttttaatcatgttaatgttgtatatattagacaattttaaaagcttttccagttttcgtatcaca |
39223200 |
T |
|
| Q |
279 |
tccacagactgtcaaactaatttcgattatcttg |
312 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||| |
|
|
| T |
39223201 |
tccacaaactgtcaaactaatttggattatcttg |
39223234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 367 - 478
Target Start/End: Complemental strand, 39191107 - 39190995
Alignment:
| Q |
367 |
tacattgctaatgtttgattataatattatgttattgccatcctaaggttagtct-ttaatgtagttttaatttttcaagtatattgcaaaaagggtagg |
465 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||| || ||||||||| | |||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39191107 |
tacattgctaaggttttattataatattatgttattgctattgaaaggttagtatattaatgtatttttaatttttcaagtatattgcaaaaagtgtagg |
39191008 |
T |
|
| Q |
466 |
ttcaatattctga |
478 |
Q |
| |
|
||||||||||||| |
|
|
| T |
39191007 |
ttcaatattctga |
39190995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 91 - 300
Target Start/End: Original strand, 39370240 - 39370451
Alignment:
| Q |
91 |
gaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactattcctcttaatgatgatgata----tttttataac |
186 |
Q |
| |
|
||||||||||| | ||||||||| ||||||||||| |||||||| ||||||||| || | |||| ||||||||||||||| |||||||||| |
|
|
| T |
39370240 |
gaggaaaaagatttgggtaaatgttcttattcatctagtttattgatttaatttcattataattgttccacttaatgatgatgatgatattttttataac |
39370339 |
T |
|
| Q |
187 |
ctgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaagattttccagttttcatatcacatccacaga |
286 |
Q |
| |
|
| |||||| || |||| |||||||||| ||||||||||||||||| ||||| || |||||||| ||||| ||||||| ||| ||||||||| |||| | |
|
|
| T |
39370340 |
ccgatctatatagttctataaaaacattcttaatcatgttaatgttgtatgtcttggtcaatttaaaaagcttttccaatttacatatcacacccac--a |
39370437 |
T |
|
| Q |
287 |
ctgtcaaactaatt |
300 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
39370438 |
cagtcaaactaatt |
39370451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 422 - 530
Target Start/End: Original strand, 39370541 - 39370649
Alignment:
| Q |
422 |
ttaatgtagttttaatttttcaagtatattgcaaaaagggtaggttcaatattctgatagacattaaggggcacttaatagtcctattagtgcaactatt |
521 |
Q |
| |
|
||||||||||||| || |||| ||||| |||||||||| |||||||||||||| ||| | ||||| |||||||||||||| ||||||||||||||||| | |
|
|
| T |
39370541 |
ttaatgtagttttgatctttctagtattttgcaaaaagtgtaggttcaatattttgacaaacattgaggggcacttaataatcctattagtgcaactact |
39370640 |
T |
|
| Q |
522 |
tctcgtctt |
530 |
Q |
| |
|
||| ||||| |
|
|
| T |
39370641 |
tctagtctt |
39370649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 82 - 278
Target Start/End: Complemental strand, 39381431 - 39381235
Alignment:
| Q |
82 |
tatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactattcctcttaatgatgatgatattttt |
181 |
Q |
| |
|
|||||||| ||||| ||||||| ||||||||| ||||||||| | |||| ||||||||||||||| || | || || ||||||||| ||||| |||| |
|
|
| T |
39381431 |
tatattgacgaggagcaagaatctggtaaatgttcttattcatatagtttactgaaagaatttcatttcagttgtttcttttaatgatgttgatactttt |
39381332 |
T |
|
| Q |
182 |
a-taacctgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaagattttccagttttcatatcaca |
278 |
Q |
| |
|
| |||| |||||||| |||||| ||||||| |||||||||| |||||||||| |||| || ||| | |||||||| || ||||||||| ||||||| |
|
|
| T |
39381331 |
attaacttgatctacataattcattaaaaatatttttaatcgtgttaatgttgtatg-cttggtcgacttgaaaagcttctccagtttttgtatcaca |
39381235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 482 - 569
Target Start/End: Original strand, 39223282 - 39223369
Alignment:
| Q |
482 |
acattaaggggcacttaatagtcctattagtgcaactatttctcgtcttatttattaatcaattaaatctaacactttctacgttgat |
569 |
Q |
| |
|
||||| || ||||||||||||||| |||||||||||||||| | ||||| ||||||||||||| ||||||||||| |||| ||||||| |
|
|
| T |
39223282 |
acattgagaggcacttaatagtccaattagtgcaactatttttagtcttgtttattaatcaataaaatctaacaccttctccgttgat |
39223369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 86 - 182
Target Start/End: Complemental strand, 39421748 - 39421652
Alignment:
| Q |
86 |
ttgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactattcctcttaatgatgatgatattttta |
182 |
Q |
| |
|
||||||||||||| ||||| ||||||||| ||||||||||| ||||||||||||| ||||||| ||||| || || ||||||| ||||||||||| |
|
|
| T |
39421748 |
ttgatgaggaaaatgaatctggtaaatgttcttattcatctaatttattgaaagagtttcatttcaactgtttcttacaatgatgttgatattttta |
39421652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 39389193 - 39389129
Alignment:
| Q |
9 |
aaaggcgaaggagctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcctgcgtcaa |
73 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| | |||||| ||||||| ||||| |
|
|
| T |
39389193 |
aaaggtgaaggagctcaacttaaaagaaaagcagtttgaagggcaagtcaacgatcctgagtcaa |
39389129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 39161835 - 39161886
Alignment:
| Q |
15 |
gaaggagctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcct |
66 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
39161835 |
gaaggagctcaacttaaaagaaaagcaatttgaaggacaagtcaaggatcct |
39161886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 39207359 - 39207308
Alignment:
| Q |
15 |
gaaggagctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcct |
66 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
39207359 |
gaaggagctcaacttaaaagaaaagcaatttgaaggacaagtcaaggatcct |
39207308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 461 - 535
Target Start/End: Complemental strand, 39414332 - 39414258
Alignment:
| Q |
461 |
gtaggttcaatattctgatagacattaaggggcacttaatagtcctattagtgcaactatttctcgtcttattta |
535 |
Q |
| |
|
|||||||||||||||||| | |||| ||||||||||||||||||||| ||||||||||||| | || ||||||| |
|
|
| T |
39414332 |
gtaggttcaatattctgacaaccattgaggggcacttaatagtcctatcagtgcaactatttatagttttattta |
39414258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 423 - 456
Target Start/End: Complemental strand, 39381079 - 39381046
Alignment:
| Q |
423 |
taatgtagttttaatttttcaagtatattgcaaa |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
39381079 |
taatgtagttttaatttttcaagtatattgcaaa |
39381046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 39426358 - 39426307
Alignment:
| Q |
204 |
ttaaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaa |
255 |
Q |
| |
|
|||||||||| ||||||||||||||| || ||||| |||||||| ||||||| |
|
|
| T |
39426358 |
ttaaaaacatgtttaatcatgttaatcttgtatgtcttagtcaacttgaaaa |
39426307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 39215626 - 39215676
Alignment:
| Q |
16 |
aaggagctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcct |
66 |
Q |
| |
|
|||||| |||| |||||||| |||||||||| ||||| ||||||||||||| |
|
|
| T |
39215626 |
aaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcct |
39215676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 39459249 - 39459295
Alignment:
| Q |
19 |
gagctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcc |
65 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||||| |||||||||||| |
|
|
| T |
39459249 |
gagctcaagttaaaagacaagcaatttgaaggacaagtcaaggatcc |
39459295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 39381557 - 39381509
Alignment:
| Q |
19 |
gagctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcctg |
67 |
Q |
| |
|
|||||||| |||||||| |||||||||||| ||| || ||||||||||| |
|
|
| T |
39381557 |
gagctcaagttaaaagagaagcagtttgaaagacaagacaaggatcctg |
39381509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 39473325 - 39473285
Alignment:
| Q |
86 |
ttgatgaggaaaaagaatcaggtaaatgtgcttattcatct |
126 |
Q |
| |
|
|||||||||||| |||||| ||||||||| ||||||||||| |
|
|
| T |
39473325 |
ttgatgaggaaatagaatcgggtaaatgttcttattcatct |
39473285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 112; Significance: 3e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 85 - 390
Target Start/End: Original strand, 33561119 - 33561427
Alignment:
| Q |
85 |
attgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactattcctcttaatgatgatgat-attttt-- |
181 |
Q |
| |
|
|||||| ||||||||||||| ||||||||| ||| ||||||| |||||||||||||||| ||| || | ||||||| | |||||||||| |||||| |
|
|
| T |
33561119 |
attgataaggaaaaagaatccggtaaatgttcttcttcatctagtttattgaaagaattttattataagtgttcctctcagtgatgatgatgattttttg |
33561218 |
T |
|
| Q |
182 |
--ataacctgatctacttaattctttaaaaacatttttaatcatgttaatgttc-tatgtattagtcaatttgaaaagattttccagttttcatatcaca |
278 |
Q |
| |
|
||| ||||||||||||||| ||||||| ||||||||||||||||||||||| ||||| || |||||||||||||| |||| | | |||||||||||| |
|
|
| T |
33561219 |
ttatatcctgatctacttaatcctttaaacacatttttaatcatgttaatgtttgtatgtcttggtcaatttgaaaagcttttactgatttcatatcaca |
33561318 |
T |
|
| Q |
279 |
tccacagactgtcaaactaatttcgattatcttgtcacccttgaacattacatgtatctcttaagtgaaaaaactctggtgttttttatacattgctaat |
378 |
Q |
| |
|
||||||||| ||| |||||| | |||||| || ||||||||||||||| ||||||||||||||||||||| ||| ||| ||||||| ||| ||||| |
|
|
| T |
33561319 |
cccacagactttcagactaatctggattatattttcacccttgaacattttatgtatctcttaagtgaaaaa--tctcgtg-tttttatccatggctaag |
33561415 |
T |
|
| Q |
379 |
gtttgattataa |
390 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
33561416 |
gttttattataa |
33561427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 33561001 - 33561058
Alignment:
| Q |
9 |
aaaggcgaaggagctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcct |
66 |
Q |
| |
|
||||| ||||||||||| |||||||| |||||||| |||||||| || |||||||||| |
|
|
| T |
33561001 |
aaaggtgaaggagctcagcttaaaagtaaagcagtgtgaaggacaaggcaaggatcct |
33561058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 88 - 306
Target Start/End: Original strand, 45342158 - 45342378
Alignment:
| Q |
88 |
gatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactattcctcttaatgatgatgatattttt-ataac |
186 |
Q |
| |
|
|||||||||||||||| |||||| | |||||||||| |||||||||||||||||||| |||||||| || || ||||| |||||||||| ||||| |
|
|
| T |
45342158 |
gatgaggaaaaagaatttggtaaaatttgttattcatctagtttattgaaagaatttcatttcaactatttcttttgttgatgttgatatttttaataac |
45342257 |
T |
|
| Q |
187 |
ctgatctacttaattctttaaaa---acatttttaatcatgttaatgttctatgtattagtcaatttgaaaagattttccagttttcatatcacatccac |
283 |
Q |
| |
|
||||||||| || | ||||||| | || |||||| |||||||||| ||| | |||||||| |||||||| || ||||||||| |||| | ||| |
|
|
| T |
45342258 |
ctgatctacatattcttttaaaaaatatatgtttaatgatgttaatgtagtatatcttagtcaagttgaaaagcttgtccagtttttatatttc--tcac |
45342355 |
T |
|
| Q |
284 |
agactgtcaaactaatttcgatt |
306 |
Q |
| |
|
| |||||||||||||||| |||| |
|
|
| T |
45342356 |
acactgtcaaactaatttggatt |
45342378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 435 - 522
Target Start/End: Original strand, 44729841 - 44729928
Alignment:
| Q |
435 |
aatttttcaagtatattgcaaaaagggtaggttcaatattctgatagacattaaggggcacttaatagtcctattagtgcaactattt |
522 |
Q |
| |
|
||||||||||||||||||| || || |||||| | ||| |||||| ||||| ||| |||||||| ||| |||||| ||||||||||| |
|
|
| T |
44729841 |
aatttttcaagtatattgccaatagtgtaggtgtagtatcctgataaacattgaggtgcacttaacagttctattattgcaactattt |
44729928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 195
Target Start/End: Original strand, 19807947 - 19808057
Alignment:
| Q |
86 |
ttgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaactattcctcttaatgatgatgatattttt-ata |
184 |
Q |
| |
|
||||||||||||||| ||| |||||| || ||||||||||| ||||| ||| || ||||||| || || || || || |||||| |||||||||| ||| |
|
|
| T |
19807947 |
ttgatgaggaaaaagcatcgggtaaaagttcttattcatctagtttatagaaggagtttcatttcagctgtttctttttatgatgttgatatttttaata |
19808046 |
T |
|
| Q |
185 |
acctgatctac |
195 |
Q |
| |
|
||||||||||| |
|
|
| T |
19808047 |
acctgatctac |
19808057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 16113423 - 16113494
Alignment:
| Q |
83 |
atattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgaaagaatttcattgcaact |
154 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||| || |||||||| |||||||||| || |||||| ||||| |
|
|
| T |
16113423 |
atattgacgaggaaaaagaatcgggtaagtgttctcattcatctagtttattgaaaaaaattcatttcaact |
16113494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 16113286 - 16113339
Alignment:
| Q |
9 |
aaaggcgaaggagctcaacttaaaagaaaagcagtttgaaggactagtcaagga |
62 |
Q |
| |
|
||||| |||||||||||| |||||||| |||||| |||||| || ||||||||| |
|
|
| T |
16113286 |
aaaggagaaggagctcaagttaaaagagaagcagattgaagtacaagtcaagga |
16113339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University