View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11738_low_7 (Length: 420)
Name: NF11738_low_7
Description: NF11738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11738_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 8 - 404
Target Start/End: Complemental strand, 4624422 - 4624026
Alignment:
| Q |
8 |
aagcatagggttacttttaatgaaccattctcttacactttgagtacatcagattggtacaagtccacacacaaccaacttcttgctcatgcagatgttg |
107 |
Q |
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|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4624422 |
aagcattgggttacttttaatgagccattctcttacactttgagtacatcagattggtacaagtccacacacaaccaacttcttgctcatgcagatgttt |
4624323 |
T |
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| Q |
108 |
tcgaattgtataaaaccacatatcaggctcaaaatggtgcaataggcattggattaaactctcactggtttaaaccatactcaactgacccattagatca |
207 |
Q |
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| T |
4624322 |
tcgaattgtataaaaccacatatcaggctcaaaatggtgtaataggcattggattaaactctcactggtttaaaccatactcaactgacccattagatca |
4624223 |
T |
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| Q |
208 |
aaaagccgctgaagacgcccttgatttcatgtttggatggtaacaactatactttttgaccgtttctacaacaaccatggatcgcgacaaaattgtgacc |
307 |
Q |
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| T |
4624222 |
aaaagccgctgaagacgcccttgatttcatgtttggatggtaacaactatactttttgaccgtttctacaacaaccatggatcgcgacaaaattgtgacc |
4624123 |
T |
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| Q |
308 |
gtataatttgaaatcttctttatctgtttgcaggtttatacaaccactgacaacaggagagtatccagcaagcttggtgtcttatgtgggagataag |
404 |
Q |
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| T |
4624122 |
gtataatttaaaatcttctttatctgtttgcaggtttatacagccactgacaacaggagagtatccagcaagcttggtgtcttatgtgggagataag |
4624026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 135 - 390
Target Start/End: Complemental strand, 4599961 - 4599709
Alignment:
| Q |
135 |
ctcaaaatggtgcaataggcattggattaaactctcactggtttaaaccatactcaactgacccattagatcaaaaagccgctgaagacgcccttgattt |
234 |
Q |
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| T |
4599961 |
ctcaaaacggtgtaataggcattggattaaactctcactggtttaaaccgtactcaacagacccattagatcaacaagccaccgaacgcgcccttgattt |
4599862 |
T |
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| Q |
235 |
catgtttggatggtaacaactatactttttgaccgtttctacaacaaccatggatcgcgacaaaattgtgaccgtataatttgaaatcttctttatctgt |
334 |
Q |
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|||||||||||||||| |||| ||||| ||| ||||||| ||||||||||||| ||||||||||||||| | |||||| ||||||||||||||||| |
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| T |
4599861 |
catgtttggatggtaatgacta-ctttttttaccttttctacgacaaccatggatcacgacaaaattgtgacgg--taatttaaaatcttctttatctgt |
4599765 |
T |
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| Q |
335 |
ttgcaggtttatacaaccactgacaacaggagagtatccagcaagcttggtgtctt |
390 |
Q |
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| T |
4599764 |
ttgcaggtttatacagccactgacaaccggagagtatccagcaaacatggtgtctt |
4599709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 4600174 - 4600048
Alignment:
| Q |
8 |
aagcatagggttacttttaatgaaccattctcttacactttgagtacatcagattggtacaagtccacacacaaccaacttcttgctcatgcagatgttg |
107 |
Q |
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|||||| |||||||||||||||| ||||||||||| ||||||||||||| || | ||||| |||||||||||||||||||| ||||||||| ||||| |
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| T |
4600174 |
aagcattgggttacttttaatgagccattctcttattgtttgagtacatcacatcgttacaaagccacacacaaccaacttctttctcatgcagctgttg |
4600075 |
T |
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| Q |
108 |
tcgaattgtataaaaccacatatcagg |
134 |
Q |
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| T |
4600074 |
tcgaattgtataaaaccaaatatcagg |
4600048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 332 - 398
Target Start/End: Complemental strand, 25038291 - 25038225
Alignment:
| Q |
332 |
tgtttgcaggtttatacaaccactgacaacaggagagtatccagcaagcttggtgtcttatgtggga |
398 |
Q |
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| T |
25038291 |
tgtttgtaggtttatgcagccactgacaacaggagagtatccatcaagcatggtgtcttatgtggga |
25038225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 390
Target Start/End: Complemental strand, 25017186 - 25017128
Alignment:
| Q |
332 |
tgtttgcaggtttatacaaccactgacaacaggagagtatccagcaagcttggtgtctt |
390 |
Q |
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||||||||||||||| || ||| |||| ||||||||||||||| |||| ||||||||| |
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| T |
25017186 |
tgtttgcaggtttatgcagccattgaccacaggagagtatccattaagcatggtgtctt |
25017128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 18804691 - 18804769
Alignment:
| Q |
311 |
taatttgaaatcttctttatctgtttgcaggtttatacaaccactgacaacaggagagtatccagcaagcttggtgtct |
389 |
Q |
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| T |
18804691 |
taatttaaaatcttctttatctgtttgcaggtttttacaaccactgacaacaggagagtacccagcaagcatggtgtct |
18804769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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