View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11738_low_8 (Length: 382)

Name: NF11738_low_8
Description: NF11738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11738_low_8
NF11738_low_8
[»] chr7 (1 HSPs)
chr7 (1-376)||(22555179-22555554)
[»] chr6 (8 HSPs)
chr6 (84-205)||(18142407-18142528)
chr6 (84-262)||(22996923-22997100)
chr6 (84-262)||(23791301-23791478)
chr6 (83-140)||(9039435-9039492)
chr6 (150-207)||(1317622-1317679)
chr6 (147-208)||(9545044-9545105)
chr6 (83-128)||(10862279-10862324)
chr6 (105-145)||(9039510-9039550)
[»] chr4 (2 HSPs)
chr4 (84-168)||(48292383-48292467)
chr4 (114-202)||(4873067-4873155)
[»] chr2 (4 HSPs)
chr2 (83-126)||(11761153-11761196)
chr2 (147-207)||(4983993-4984053)
chr2 (110-192)||(37629600-37629681)
chr2 (84-128)||(37041660-37041704)
[»] chr1 (2 HSPs)
chr1 (84-166)||(16082945-16083027)
chr1 (119-184)||(49632893-49632958)
[»] scaffold0013 (1 HSPs)
scaffold0013 (82-128)||(62381-62427)
[»] chr5 (2 HSPs)
chr5 (152-206)||(30513861-30513915)
chr5 (152-206)||(30554201-30554255)
[»] chr8 (1 HSPs)
chr8 (150-206)||(28798964-28799020)


Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 22555179 - 22555554
Alignment:
Q  1 tgagaagatgatagggtgggaaaagtaaaggtgtttaaactttgccaatccattatctcctcttgatagttgatttgggcttagaaaattgcttttctaa 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22555179 tgagaagatgataaggtgggaaaagtaaaggtgtttaaactttgccaatccattatctcctcttgatagttgatttgggcttagaaaattgcttttctaa 22555278  T
Q  101 cgtccaaaacttcctaataacacatggacataaccaaaaacaccctaacgatagttagctaccgttgatttataactagaaaaccgaaggtagtttacta 200  Q
    | |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22555279 catccaaaacttcctaataacacatggacataaccaaaaacaccttaacgatagttaactaccgttgatttataactagaaaaccgaaggtagtttacta 22555378  T
Q  201 ccgctgagnnnnnnnngtcatttccatgtattattaggaaacattggctgtcaaaaaagcaacggtcttgggcttaagcctgtttaaccaacatggtgtt 300  Q
    |||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22555379 ccgctgaatttttttggtcatttccatgtattattaggaaacattggctgtcaaaaaagcaacggtcttgggcttaagcctgtttaaccaacatggtgtt 22555478  T
Q  301 cgactatcacaagcccggtggtccaaattcatatttgtaacgcattttaagagtagaaatgacccctccctttgct 376  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22555479 cgactatcacaagcccagtggtccaaattcatatttgtaacgcattttaagagtagaaatgacccctccttttgct 22555554  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 84 - 205
Target Start/End: Complemental strand, 18142528 - 18142407
Alignment:
Q  84 gaaaattgcttttctaacgtccaaaacttcctaataacacatggacataaccaaaaacaccctaacgatagttagctaccgttgatttataactagaaaa 183  Q
    |||||||||||||||||| || ||| ||||||||||||||||| | || || |||||||||  | || |||||| ||| || |  ||||| |||||||||    
T  18142528 gaaaattgcttttctaacatcaaaagcttcctaataacacatgaaaatgactaaaaacacctcagcggtagttaactagcgcttgtttatgactagaaaa 18142429  T
Q  184 ccgaaggtagtttactaccgct 205  Q
    || | ||||||| |||||||||    
T  18142428 ccaacggtagttaactaccgct 18142407  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 84 - 262
Target Start/End: Complemental strand, 22997100 - 22996923
Alignment:
Q  84 gaaaattgcttttctaacgtccaaaacttcctaataacacatggacataaccaaaaacaccctaacgatagttagctaccgttgatttataactagaaaa 183  Q
    |||||||||||||||||| |  ||||||| ||||||||||||| | || |||||||| ||   | || |||||| ||||   |  |||||||||||||||    
T  22997100 gaaaattgcttttctaacattaaaaactttctaataacacatgaaaatgaccaaaaatacttcagcggtagttaactacaacttgtttataactagaaaa 22997001  T
Q  184 ccgaaggtagtttactaccgctgagnnnnnnnngtcatttccatgtattattaggaaacattggctgtcaaaaaagcaa 262  Q
    |||| ||||||| ||||| | || |        ||||||||||||||||||||| ||||||||| ||| |||| |||||    
T  22997000 ccgacggtagttaactacagttg-gatttttcggtcatttccatgtattattagaaaacattggttgtgaaaatagcaa 22996923  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 84 - 262
Target Start/End: Original strand, 23791301 - 23791478
Alignment:
Q  84 gaaaattgcttttctaacgtccaaaacttcctaataacacatggacataaccaaaaacaccctaacgatagttagctaccgttgatttataactagaaaa 183  Q
    |||||||||||||||||| |  ||||||| ||||||||||||| | || |||||||| ||   | || |||||| ||||   |  |||||||||||||||    
T  23791301 gaaaattgcttttctaacattaaaaactttctaataacacatgaaaatgaccaaaaatacttcagcggtagttaactacaacttgtttataactagaaaa 23791400  T
Q  184 ccgaaggtagtttactaccgctgagnnnnnnnngtcatttccatgtattattaggaaacattggctgtcaaaaaagcaa 262  Q
    |||| ||||||| ||||| | || |        ||||||||||||||||||||| ||||||||| ||| |||| |||||    
T  23791401 ccgacggtagttaactacagttg-gatttttcggtcatttccatgtattattagaaaacattggttgtgaaaatagcaa 23791478  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 9039435 - 9039492
Alignment:
Q  83 agaaaattgcttttctaacgtccaaaacttcctaataacacatggacataaccaaaaa 140  Q
    ||||||||| ||||||||| |||||||||||||||||||||||| | || ||||||||    
T  9039435 agaaaattgtttttctaacctccaaaacttcctaataacacatgaaaatgaccaaaaa 9039492  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 1317622 - 1317679
Alignment:
Q  150 gatagttagctaccgttgatttataactagaaaaccgaaggtagtttactaccgctga 207  Q
    |||||||| |||||| ||||||||||||| ||||| || | ||||| |||||||||||    
T  1317622 gatagttaactaccgctgatttataactaaaaaactgatgatagttaactaccgctga 1317679  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 9545105 - 9545044
Alignment:
Q  147 aacgatagttagctaccgttgatttataactagaaaaccgaaggtagtttactaccgctgag 208  Q
    |||| |||||| |||||| |||||||||||| ||||| ||| |||| || ||||||||||||    
T  9545105 aacggtagttaactaccgctgatttataactggaaaatcgacggtaattaactaccgctgag 9545044  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 10862279 - 10862324
Alignment:
Q  83 agaaaattgcttttctaacgtccaaaacttcctaataacacatgga 128  Q
    ||||||||||||||||||| |||| || ||| ||||||||||||||    
T  10862279 agaaaattgcttttctaacatccataagttcttaataacacatgga 10862324  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 9039550 - 9039510
Alignment:
Q  105 caaaacttcctaataacacatggacataaccaaaaacaccc 145  Q
    ||||||||||||| |||||||||| || |||||||||||||    
T  9039550 caaaacttcctaaaaacacatggaaatgaccaaaaacaccc 9039510  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 84 - 168
Target Start/End: Complemental strand, 48292467 - 48292383
Alignment:
Q  84 gaaaattgcttttctaacgtccaaaacttcctaataacacatggacataaccaaaaacaccctaacgatagttagctaccgttga 168  Q
    ||||||||||||| |||| ||||||||||| |||||||||||| | || ||||||||||| | | || |||||| ||||||||||    
T  48292467 gaaaattgcttttataacatccaaaacttcttaataacacatgtaaatgaccaaaaacactccagcggtagttaactaccgttga 48292383  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 4873067 - 4873155
Alignment:
Q  114 ctaataacacatggacataaccaaaaacaccctaacgatagttagctaccgttgatttataactagaaaaccgaaggtagtttactacc 202  Q
    |||| |||||||||| || | |||||||||   | || |||||| |||||| ||| ||||||||||||||| || ||||||| ||||||    
T  4873067 ctaaaaacacatggaaatgatcaaaaacacttcagcggtagttaactaccgctgacttataactagaaaactgatggtagttaactacc 4873155  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 126
Target Start/End: Complemental strand, 11761196 - 11761153
Alignment:
Q  83 agaaaattgcttttctaacgtccaaaacttcctaataacacatg 126  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  11761196 agaaaattgcttttctaacgtacaaaacttcctaataacacatg 11761153  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 4984053 - 4983993
Alignment:
Q  147 aacgatagttagctaccgttgatttataactagaaaaccgaaggtagtttactaccgctga 207  Q
    ||||||||||| |||||| | | |||||||||||||| ||| ||||||| |||||||||||    
T  4984053 aacgatagttaactaccgctaacttataactagaaaatcgacggtagttaactaccgctga 4983993  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 37629681 - 37629600
Alignment:
Q  110 cttcctaataacacatggacataaccaaaaacaccctaacgatagttagctaccgttgatttataactagaaaaccgaaggta 192  Q
    |||| ||| |||||||||| || ||||||||||  | | ||||||||| |||||| ||| |||||||||||||||||| ||||    
T  37629681 cttcttaaaaacacatggaaatgaccaaaaacattc-atcgatagttaactaccgctgacttataactagaaaaccgacggta 37629600  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 37041660 - 37041704
Alignment:
Q  84 gaaaattgcttttctaacgtccaaaacttcctaataacacatgga 128  Q
    ||||||||||||||| || |||| || ||||||||||||||||||    
T  37041660 gaaaattgcttttctgacttccagaagttcctaataacacatgga 37041704  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 166
Target Start/End: Complemental strand, 16083027 - 16082945
Alignment:
Q  84 gaaaattgcttttctaacgtccaaaacttcctaataacacatggacataaccaaaaacaccctaacgatagttagctaccgtt 166  Q
    ||||||||||||||| || || ||||| ||||||||||||||||| ||  | ||||| |||| |||| |||||| ||||||||    
T  16083027 gaaaattgcttttctgacatcaaaaacgtcctaataacacatggaaatttctaaaaaaaccccaacggtagttaactaccgtt 16082945  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 49632958 - 49632893
Alignment:
Q  119 aacacatggacataaccaaaaacaccctaacgatagttagctaccgttgatttataactagaaaac 184  Q
    |||||||||| || |||||||||| |||   | |||||| |||||| |||||||||||||||||||    
T  49632958 aacacatggaaatgaccaaaaacatcctcgtggtagttaactaccgctgatttataactagaaaac 49632893  T

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Target: scaffold0013 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 62381 - 62427
Alignment:
Q  82 tagaaaattgcttttctaacgtccaaaacttcctaataacacatgga 128  Q
    |||||||||||||||||||| || | || ||||||||||||||||||    
T  62381 tagaaaattgcttttctaacttcaataagttcctaataacacatgga 62427  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 30513861 - 30513915
Alignment:
Q  152 tagttagctaccgttgatttataactagaaaaccgaaggtagtttactaccgctg 206  Q
    |||||| |||||| ||| ||||||||||||||| || ||||||| ||||||||||    
T  30513861 tagttaactaccgctgacttataactagaaaactgacggtagttaactaccgctg 30513915  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 30554201 - 30554255
Alignment:
Q  152 tagttagctaccgttgatttataactagaaaaccgaaggtagtttactaccgctg 206  Q
    |||||| |||||| ||| ||||||||||||||| || ||||||| ||||||||||    
T  30554201 tagttaactaccgctgacttataactagaaaactgacggtagttaactaccgctg 30554255  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 28799020 - 28798964
Alignment:
Q  150 gatagttagctaccgttgatttataactagaaaaccgaaggtagtttactaccgctg 206  Q
    |||||||| |||||| ||| |||||||||||||||||  ||||||| ||||| ||||    
T  28799020 gatagttaactaccgctgacttataactagaaaaccggcggtagttaactacagctg 28798964  T

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