View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11739_high_1 (Length: 691)
Name: NF11739_high_1
Description: NF11739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11739_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 623; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 1 - 674
Target Start/End: Original strand, 55016400 - 55017071
Alignment:
| Q |
1 |
tctctttgaccatttatgtcgaaaatataaacaaaaattggtcaaataaagttaatgtgcttgtctggattaaacatcaacnnnnnnnnnnaattaatct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
55016400 |
tctctttgaccatttatgtcgaaaatataaacaaaaattggtcaaataaagttaatgtgcttgtctagattaaacatcaactttttttt--aattaatct |
55016497 |
T |
|
| Q |
101 |
ttgcatatgtttgagaccaaattaaaatttgttataagtattttaaagaatattgaactaattctaattaatatgcaactatatgtgacaggtgagtgcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55016498 |
ttgcatatgtttgagaccaaattaaaatttgttatatgtattttaaagaatattgaactaattctaattaatatgcaactatatgtgacaggtgagtgcc |
55016597 |
T |
|
| Q |
201 |
attggtgctgcttatgtggattcattgtttggtttggaagtgcctagtagagggatattgggagacgaggaattggttacgctcgtgtcagagattatca |
300 |
Q |
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| T |
55016598 |
attggtgctgcttatgtggattcattgtttggtttggaagtgcctagtagagggatattgggagacgaggaattggttacgctcgtgtcagagattatca |
55016697 |
T |
|
| Q |
301 |
gtgctggtactgacacgagcgcaacggccattgaatgggctttgcttcatttagtgatggatcaagagattcaagagaggttgtatagagaaattgttga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55016698 |
gtgctggtactgacacgagcgcaacggccattgaatgggctttgcttcatttagtgatggatcaagagattcaagagaggttgtatagagaaattgttga |
55016797 |
T |
|
| Q |
401 |
ttgtgttggaaaatgcggtattgtcatggacagtgacgttgaaaaaatgccttatctatgtgcaattgtgaaggaaactttccggcgtcatcctcctagc |
500 |
Q |
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| T |
55016798 |
ttgtgttggaaaatgcggtattgtcatggacagtgacgttgaaaaaatgccttatctatgtgcaattgtgaaggaaactttccggcgtcatcctcctagc |
55016897 |
T |
|
| Q |
501 |
cattttgtgctttcacacgcagctacggaggagacaaagcttggtggatacactattccggcagatgctagtgtggagttttacacggcttggttgtcag |
600 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55016898 |
cattttgtgctttcgcacgcggctacggaggagacaaagcttggtggatacactattccggcagatgctagtgtggagttttacacggcttggttgtcag |
55016997 |
T |
|
| Q |
601 |
aaaatccaaatacctggaaggatccggatgtgtttcgacccgagaggtttttgaatggggatggggttgatgtt |
674 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55016998 |
aaaatccaaatacctggaaggatccggatgtgtttcgacccgagaggtttttgaatggggatggggttgatgtt |
55017071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 7974890 - 7974854
Alignment:
| Q |
22 |
aaaatataaacaaaaattggtcaaataaagttaatgt |
58 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||| |
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| T |
7974890 |
aaaatataaacaaaaattggtcaataaaagttaatgt |
7974854 |
T |
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