View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11739_high_13 (Length: 252)
Name: NF11739_high_13
Description: NF11739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11739_high_13 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 54397039 - 54396802
Alignment:
| Q |
15 |
atgaacccacagaacaccgtcttcgatgctaagcgtttaattggtcgtagattctccgatgaatcagttcaaaacgacatgaaactatggccgtttaaag |
114 |
Q |
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| T |
54397039 |
atgaatccacagaacaccgtcttcgatgctaagcgtttaattggtcgtagattctccgatgaatcagttcaaaacgacatgaaactatggccgtttaaag |
54396940 |
T |
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| Q |
115 |
tcgttccaggtcccgctgaaaaacctatgatcgttgttaattacaaaggtgaagagaagaaatttgcagcagaggaaatttcttcaatggtgttgatcaa |
214 |
Q |
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| T |
54396939 |
tcgttccaggtcccgctgaaaaacctatgatcgttgttaattacaaaggtgaagagaagaaatttgcagcagaggaaatttcttcaatggtgttgatcaa |
54396840 |
T |
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| Q |
215 |
gatgagagaagttgctgaagcttttcttggtcatccag |
252 |
Q |
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| T |
54396839 |
gatgagagaagttgctgaagcttttcttggtcatccag |
54396802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 179
Target Start/End: Original strand, 23587309 - 23587449
Alignment:
| Q |
39 |
gatgctaagcgtttaattggtcgtagattctccgatgaatcagttcaaaacgacatgaaactatggccgtttaaagtcgttccaggtcccgctgaaaaac |
138 |
Q |
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| T |
23587309 |
gatgctaagcgattaattggtaggcgatttggcgatgtttcagtacagagcgacatgaaattgtggccgttcaaggtcattcctggccctgctgacaaac |
23587408 |
T |
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| Q |
139 |
ctatgatcgttgttaattacaaaggtgaagagaagaaattt |
179 |
Q |
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| T |
23587409 |
caatgatcgtggtgaactacaaagcggaagagaagcaattt |
23587449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 17703613 - 17703654
Alignment:
| Q |
27 |
aacaccgtcttcgatgctaagcgtttaattggtcgtagattc |
68 |
Q |
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| T |
17703613 |
aacaccgtcttcgatgctaagaggttgattggtcgtagattc |
17703654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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