View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11739_high_15 (Length: 245)
Name: NF11739_high_15
Description: NF11739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11739_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 55016352 - 55016109
Alignment:
| Q |
1 |
taaaagttagttatgattagtcggaagttaccatttcgggatctccacattttccatcacttttcacgtaaactttccgtttccttatcaacggcactat |
100 |
Q |
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| T |
55016352 |
taaaagttagttatgattagtcggaagttaccatttcgggatctccacattttccatcactttccacgtaaactttccgtttccttatcaacggcgctat |
55016253 |
T |
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| Q |
101 |
aagctccagctgtttcttcctcagcttcttcgcttccttcacatgtccgcggaataatggtgttaaaaccggtaaaaaatctggaagcttaggaagcgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55016252 |
aagctccagctgtttcttcctcagcttcttcgcttccttcacatgtccgcggaataatggtgttaaaaccggtaaaaaatctggaagcttaggaagcgta |
55016153 |
T |
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| Q |
201 |
atgagcatgacttctttgagaacactctcaatatctctgcttct |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
55016152 |
atgagcatgacttctttgagaacactctcaatatctctgattct |
55016109 |
T |
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