View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11739_high_18 (Length: 236)

Name: NF11739_high_18
Description: NF11739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11739_high_18
NF11739_high_18
[»] chr1 (10 HSPs)
chr1 (20-180)||(16814800-16814962)
chr1 (57-180)||(17888414-17888537)
chr1 (65-169)||(32907821-32907922)
chr1 (53-215)||(33473502-33473660)
chr1 (65-215)||(25646756-25646900)
chr1 (63-151)||(18467722-18467810)
chr1 (68-209)||(51995411-51995543)
chr1 (149-215)||(27572051-27572117)
chr1 (179-215)||(31038264-31038300)
chr1 (178-214)||(18467661-18467697)
[»] chr5 (7 HSPs)
chr5 (64-215)||(5325224-5325375)
chr5 (53-215)||(15030061-15030214)
chr5 (66-201)||(17361151-17361280)
chr5 (65-208)||(11077518-11077659)
chr5 (65-207)||(26228038-26228175)
chr5 (93-212)||(31253879-31253994)
chr5 (140-213)||(42478428-42478495)
[»] chr2 (7 HSPs)
chr2 (64-214)||(24003233-24003384)
chr2 (53-215)||(22999706-22999868)
chr2 (80-213)||(20125643-20125772)
chr2 (66-215)||(37787174-37787317)
chr2 (130-215)||(22381719-22381804)
chr2 (130-215)||(22913745-22913830)
chr2 (177-205)||(42757743-42757771)
[»] chr4 (6 HSPs)
chr4 (53-228)||(8016142-8016307)
chr4 (65-215)||(790652-790793)
chr4 (68-209)||(32105636-32105768)
chr4 (53-215)||(52245148-52245305)
chr4 (171-215)||(11351538-11351581)
chr4 (176-212)||(20808996-20809032)
[»] chr7 (8 HSPs)
chr7 (79-214)||(7194065-7194194)
chr7 (63-213)||(24688132-24688278)
chr7 (65-159)||(18995444-18995538)
chr7 (86-213)||(39605708-39605831)
chr7 (65-212)||(23846362-23846505)
chr7 (65-212)||(46857528-46857669)
chr7 (66-215)||(24056211-24056354)
chr7 (175-211)||(25706701-25706737)
[»] chr6 (1 HSPs)
chr6 (65-215)||(12522261-12522402)
[»] chr3 (12 HSPs)
chr3 (65-215)||(15819815-15819956)
chr3 (53-212)||(3330701-3330856)
chr3 (65-213)||(6512841-6512980)
chr3 (65-201)||(38111861-38111990)
chr3 (65-215)||(37978785-37978929)
chr3 (65-213)||(6748241-6748380)
chr3 (57-185)||(4611768-4611895)
chr3 (67-213)||(6473621-6473758)
chr3 (65-213)||(6473104-6473238)
chr3 (68-207)||(40474994-40475124)
chr3 (68-209)||(818210-818342)
chr3 (65-128)||(11985203-11985266)
[»] chr8 (4 HSPs)
chr8 (68-213)||(34967647-34967786)
chr8 (54-130)||(13151647-13151724)
chr8 (65-215)||(22998412-22998556)
chr8 (175-215)||(7406550-7406590)
[»] scaffold0625 (1 HSPs)
scaffold0625 (65-159)||(1118-1212)
[»] scaffold0069 (1 HSPs)
scaffold0069 (94-213)||(19423-19538)
[»] scaffold0044 (1 HSPs)
scaffold0044 (65-228)||(21916-22073)
[»] scaffold0006 (1 HSPs)
scaffold0006 (95-213)||(93165-93278)


Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 180
Target Start/End: Original strand, 16814800 - 16814962
Alignment:
Q  20 tcgtggtgctcatacctgttgattgaccatccctcgcagcactgtgggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttca 119  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||  ||||||||| ||||||||||    
T  16814800 tcgtggtgctcatacctgttgattgaccatccctcgcaacactgtgggttgtaggcgtggggttctgtatccgtgttgacggtcgaatccctcaccttca 16814899  T
Q  120 cgaaatttggtac--tgtataacttgagggaggtttcaaaatcctcatcagtatacatgtttg 180  Q
    |||||||||||||  | |||||||||||||||||||||||||||||||| |||||||||||||    
T  16814900 cgaaatttggtactatatataacttgagggaggtttcaaaatcctcatcggtatacatgtttg 16814962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 17888537 - 17888414
Alignment:
Q  57 agcactgtgggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaa 156  Q
    ||||| || ||||||||||||| | || ||||||| ||||||||||  ||  ||||||||||||||| ||||||||   |||||||| ||||||||||||    
T  17888537 agcacagtaggttgtaggcgtgagattctgtatccgtgttggtggttaaacatctcaccttcacgaagtttggtacaaaataacttgggggaggtttcaa 17888438  T
Q  157 aatcctcatcagtatacatgtttg 180  Q
    ||||||||||||| ||| ||||||    
T  17888437 aatcctcatcagtctacctgtttg 17888414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 65 - 169
Target Start/End: Original strand, 32907821 - 32907922
Alignment:
Q  65 gggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctca 164  Q
    |||||||||||||||| || ||||||| |||||| || ||||||||||||||||||||| ||||| ||  ||||||||  ||||||||||||||||||||    
T  32907821 gggttgtaggcgtggg-ttatgtatccgtgttggcggacgaatctctcaccttcacgaagtttggcac--tataactttggggaggtttcaaaatcctca 32907917  T
Q  165 tcagt 169  Q
     ||||    
T  32907918 ccagt 32907922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 53 - 215
Target Start/End: Original strand, 33473502 - 33473660
Alignment:
Q  53 tcgcagcactgtgggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtt 152  Q
    ||||||||  ||||||||||||| ||||||| ||||||  |||||| ||| |||||||| ||||||| ||| |||||  || |||||||||   ||||||    
T  33473502 tcgcagcatagtgggttgtaggcatggggttctgtatctgtgttggcggtagaatctctgaccttcatgaagtttggctctatataacttggatgaggtt 33473601  T
Q  153 tcaaaatcctcatcagtatacatgtttgatgttggactgtttggctcgaaagagacgttatgc 215  Q
    ||||||||| ||||| | |||     |||||||||| |||||||||| |||||||||| ||||    
T  33473602 tcaaaatccacatcactctac----ctgatgttggattgtttggctcaaaagagacgtcatgc 33473660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 65 - 215
Target Start/End: Complemental strand, 25646900 - 25646756
Alignment:
Q  65 gggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctca 164  Q
    |||||||||| ||| |||| |||||   |||||| ||||| || ||||||||||||||| ||| | ||| ||||||||| ||||||||||||||||||||    
T  25646900 gggttgtaggagtgtggttctgtatttgtgttggcggtcggatttctcaccttcacgaagtttagcactatataacttgggggaggtttcaaaatcctca 25646801  T
Q  165 tcagtatacatgtttgatgttggactgtttggctcgaaagagacgttatgc 215  Q
    || |      | |||||||||||| | ||| |||||||||||||| |||||    
T  25646800 tcgg------tctttgatgttggattttttagctcgaaagagacgctatgc 25646756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 18467810 - 18467722
Alignment:
Q  63 gtgggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggt 151  Q
    |||||||||||| |||||||| ||||||| |||||| ||||||||||| ||||||||| || |||||||||  |||| ||| |||||||    
T  18467810 gtgggttgtaggagtggggttatgtatccttgttggcggtcgaatctcccaccttcacaaagtttggtactaaataaattgggggaggt 18467722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 209
Target Start/End: Complemental strand, 51995543 - 51995411
Alignment:
Q  68 ttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctcatca 167  Q
    |||||||||||||| |  |||||| |||||| ||||||||||| |||||||||||| ||||  ||  ||||||||| |||| |||||||||||| |||||    
T  51995543 ttgtaggcgtggggatccgtatccgtgttggcggtcgaatctcccaccttcacgaagtttg--acactataacttg-gggatgtttcaaaatccgcatca 51995447  T
Q  168 gtatacatgtttgatgttggactgtttggctcgaaagagacg 209  Q
    |      | | |||||||||| |||||| |||||||||||||    
T  51995446 g------tctctgatgttggattgtttgtctcgaaagagacg 51995411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 27572051 - 27572117
Alignment:
Q  149 ggtttcaaaatcctcatcagtatacatgtttgatgttggactgtttggctcgaaagagacgttatgc 215  Q
    |||||||||||||||  || | ||| | |||||||||||| |||||||||||||||||| |||||||    
T  27572051 ggtttcaaaatcctcgccactctacctatttgatgttggattgtttggctcgaaagagatgttatgc 27572117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 31038300 - 31038264
Alignment:
Q  179 tgatgttggactgtttggctcgaaagagacgttatgc 215  Q
    |||||||||||||||||||||||||||||| ||||||    
T  31038300 tgatgttggactgtttggctcgaaagagacattatgc 31038264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 18467697 - 18467661
Alignment:
Q  178 ttgatgttggactgtttggctcgaaagagacgttatg 214  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  18467697 ttgatgtttgactgtttggctcgaaagagatgttatg 18467661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 8e-45; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 64 - 215
Target Start/End: Original strand, 5325224 - 5325375
Alignment:
Q  64 tgggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctc 163  Q
    |||||||||||||||||||| | |||||||||||| ||| |||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||| ||    
T  5325224 tgggttgtaggcgtggggttctatatccatgttggcggttgaatctctcaccttcacgaagtttggtactatataacttaagggaggtttcaaaatcttc 5325323  T
Q  164 atcagtatacatgtttgatgttggactgtttggctcgaaagagacgttatgc 215  Q
    || | | ||| ||| |||||||||| |||||||||| |||||||||||||||    
T  5325324 attattctacctgtctgatgttggattgtttggctcaaaagagacgttatgc 5325375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 53 - 215
Target Start/End: Complemental strand, 15030214 - 15030061
Alignment:
Q  53 tcgcagcactgtgggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtt 152  Q
    ||||||||  |||||||||||||||||| || ||||||| |||||| |||||||||||||||||||||||| ||||  ||  ||||||||| ||||||||    
T  15030214 tcgcagcatggtgggttgtaggcgtggg-ttctgtatccgtgttggcggtcgaatctctcaccttcacgaagtttg--acactataacttgggggaggtt 15030118  T
Q  153 tcaaaatcctcatcagtatacatgtttgatgttggactgtttggctcgaaagagacgttatgc 215  Q
    ||||||||||||||||      | |||||||||||||||||||||||||||||||||||||||    
T  15030117 tcaaaatcctcatcag------tctttgatgttggactgtttggctcgaaagagacgttatgc 15030061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 66 - 201
Target Start/End: Original strand, 17361151 - 17361280
Alignment:
Q  66 ggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctcat 165  Q
    ||||||| | ||||||||||||||||||||| | |||||||||||||||||||||||| ||||  ||| |||||||||||||||||||||||||||||||    
T  17361151 ggttgtatgtgtggggttttgtatccatgttcgcggtcgaatctctcaccttcacgaagtttgacactatataacttgagggaggtttcaaaatcctcat 17361250  T
Q  166 cagtatacatgtttgatgttggactgtttggctcga 201  Q
    |||||      |||||||||||||||||||||||||    
T  17361251 cagta------tttgatgttggactgtttggctcga 17361280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 208
Target Start/End: Complemental strand, 11077659 - 11077518
Alignment:
Q  65 gggttgtaggcgtggggttttgt--atccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcct 162  Q
    ||||||||| ||||||||| ||   |||| |||||| ||| |||||||||||||||||||| |||||  |  |||||||||   | ||||||||||||||    
T  11077659 gggttgtagacgtggggttctgatcatccgtgttggcggtagaatctctcaccttcacgaagtttggctccatataacttggatgcggtttcaaaatcct 11077560  T
Q  163 catcagtatacatgtttgatgttggactgtttggctcgaaagagac 208  Q
    |||| ||     ||| ||||||||||||||||||||||||||||||    
T  11077559 catctgt----ctgtctgatgttggactgtttggctcgaaagagac 11077518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 207
Target Start/End: Original strand, 26228038 - 26228175
Alignment:
Q  65 gggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctca 164  Q
    |||||||||| |||||||| ||||||| || ||| ||| |||||| | |||| || ||| |||||  || ||||||||| ||||| ||||||||||||||    
T  26228038 gggttgtaggtgtggggttctgtatccgtgatggcggtagaatcttttacctgcatgaa-tttggctctatataacttgggggagatttcaaaatcctca 26228136  T
Q  165 tcagtatacatgtttgatgttggactgtttggctcgaaagaga 207  Q
    ||||| |||     |||||||||||| ||||||||||||||||    
T  26228137 tcagtctac----ctgatgttggactatttggctcgaaagaga 26228175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 212
Target Start/End: Complemental strand, 31253994 - 31253879
Alignment:
Q  93 tgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctcatcagtatacatgtttgatgttggactgt 192  Q
    |||||| ||| ||| |||||||||||||||| ||||   || |||| ||||   | |||||||||||||||||| || |    |||||||||||||||||    
T  31253994 tgttggcggtagaagctctcaccttcacgaagtttgactctatatatcttggatgcggtttcaaaatcctcatcggtct----gtttgatgttggactgt 31253899  T
Q  193 ttggctcgaaagagacgtta 212  Q
    ||||||||| ||||| ||||    
T  31253898 ttggctcgatagagatgtta 31253879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 42478495 - 42478428
Alignment:
Q  140 cttgagggaggtttcaaaatcctcatcagtatacatgtttgatgttggactgtttggctcgaaagagacgttat 213  Q
    |||| ||||||||||||||| ||||||||| |      |||||||||||||||||| ||||||| |||||||||    
T  42478495 cttgggggaggtttcaaaattctcatcagtct------ttgatgttggactgtttgactcgaaaaagacgttat 42478428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 64 - 214
Target Start/End: Complemental strand, 24003384 - 24003233
Alignment:
Q  64 tgggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctc 163  Q
    |||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||| ||||   || ||||||||| |||| ||||||||||||||    
T  24003384 tgggttgtaggcgtggggttttgtatccgtgttggcggtagaatctctcaccttcacgaagtttgactctatataacttggggga-gtttcaaaatcctc 24003286  T
Q  164 atcagtatacatgtt--tgatgttggactgtttggctcgaaagagacgttatg 214  Q
    ||| || ||| || |  ||||||||||||||||||||||||||||||||||||    
T  24003285 atcggtctacctgatgctgatgttggactgtttggctcgaaagagacgttatg 24003233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 215
Target Start/End: Complemental strand, 22999868 - 22999706
Alignment:
Q  53 tcgcagcactgtgggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtt 152  Q
    ||||||||  |||| |||| |||||||||||||||||   |||||||||| |||||| ||||||||||||| |||| |||| ||||||||  ||||||||    
T  22999868 tcgcagcatagtggattgttggcgtggggttttgtatttgtgttggtggtagaatctttcaccttcacgaagtttgttactatataacttaggggaggtt 22999769  T
Q  153 tcaaaatcctcatcagtatacatgtttgatgttggactgtttggctcgaaagagacgttatgc 215  Q
    ||||||||||||||| | ||| ||||||| |||||| |||||  ||||||| |||||||||||    
T  22999768 tcaaaatcctcatcattctacctgtttgaagttggattgtttcactcgaaatagacgttatgc 22999706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 80 - 213
Target Start/End: Original strand, 20125643 - 20125772
Alignment:
Q  80 ggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctcatcagtatacatgttt 179  Q
    |||||||||||| ||||||  || |||||| ||||||||||||| |||||  || ||||||||| ||||||||||||||||||||||||| ||||    |    
T  20125643 ggttttgtatccgtgttggcagtagaatctttcaccttcacgaagtttggctctatataacttgggggaggtttcaaaatcctcatcagtctaca----t 20125738  T
Q  180 gatgttggactgtttggctcgaaagagacgttat 213  Q
    ||||||||||| ||||||| ||||||||||||||    
T  20125739 gatgttggactatttggcttgaaagagacgttat 20125772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 215
Target Start/End: Complemental strand, 37787317 - 37787174
Alignment:
Q  66 ggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctcat 165  Q
    |||||||||||||||||| | ||||  |||||| ||| |||| | ||||||||||||| ||||| ||| | ||||||| |||||||||||||||||| ||    
T  37787317 ggttgtaggcgtggggttctatatctgtgttggcggttgaatttatcaccttcacgaagtttggcactttgtaacttgggggaggtttcaaaatccttat 37787218  T
Q  166 cagtatacatgtttgatgttggactgtttggctcgaaagagacgttatgc 215  Q
    |||| ||      |||||||||||| ||||||  |||||||||| |||||    
T  37787217 cagttta------tgatgttggactctttggcatgaaagagacgctatgc 37787174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 22381719 - 22381804
Alignment:
Q  130 tactgtataacttgagggaggtttcaaaatcctcatcagtatacatgtttgatgttggactgtttggctcgaaagagacgttatgc 215  Q
    |||| ||||||||  ||||||||||||||||||||||| | ||| ||||||| | |||| |||||  ||||||| |||||||||||    
T  22381719 tactatataacttaggggaggtttcaaaatcctcatcattctacctgtttgaagctggattgtttcactcgaaaaagacgttatgc 22381804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 22913745 - 22913830
Alignment:
Q  130 tactgtataacttgagggaggtttcaaaatcctcatcagtatacatgtttgatgttggactgtttggctcgaaagagacgttatgc 215  Q
    |||| ||||||||  ||||||||||||||||||||||| | ||| ||||||| | |||| |||||  ||||||| |||||||||||    
T  22913745 tactatataacttaggggaggtttcaaaatcctcatcattctacctgtttgaagctggattgtttcactcgaaaaagacgttatgc 22913830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Original strand, 42757743 - 42757771
Alignment:
Q  177 tttgatgttggactgtttggctcgaaaga 205  Q
    |||||||||||||||||||||||||||||    
T  42757743 tttgatgttggactgtttggctcgaaaga 42757771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 228
Target Start/End: Complemental strand, 8016307 - 8016142
Alignment:
Q  53 tcgcagcactgtgggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtt 152  Q
    ||||||||  ||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||  |||| ||||| ||| |||||| || ||||||||    
T  8016307 tcgcagcatagtgggttgtaggcatggggttatgtatccgtgttggtggtcgaatctctcacctt--cgaagtttggcactatataacatgggggaggtt 8016210  T
Q  153 tcaaaatcctcatcagtatacatgtttgatgttggactgtttggctcgaaagagacgttatgcacttgttgatgtc 228  Q
    ||||| || |||||||      | |||||||||||| |||||||||||||||||||||||||  ||||||||||||    
T  8016209 tcaaattcttcatcag------tctttgatgttggattgtttggctcgaaagagacgttatg--cttgttgatgtc 8016142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 65 - 215
Target Start/End: Original strand, 790652 - 790793
Alignment:
Q  65 gggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctca 164  Q
    |||||||||||||||| || ||||||| |||||| ||||||||||| |||||||||||| ||||| ||  ||||||||| ||||||||||||||||||||    
T  790652 gggttgtaggcgtggg-ttctgtatccgtgttggcggtcgaatctcccaccttcacgaagtttggcac--tataacttgggggaggtttcaaaatcctca 790748  T
Q  165 tcagtatacatgtttgatgttggactgtttggctcgaaagagacgttatgc 215  Q
    ||||      | ||||||||||||||||||||||||||| ||| |||||||    
T  790749 tcag------tctttgatgttggactgtttggctcgaaaaagatgttatgc 790793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 209
Target Start/End: Complemental strand, 32105768 - 32105636
Alignment:
Q  68 ttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctcatca 167  Q
    |||||||||||||| |  |||||| |||||| ||||||||||| |||||||||||| ||||  ||  ||||||||| |||| |||||||||||| |||||    
T  32105768 ttgtaggcgtggggatccgtatccgtgttggcggtcgaatctcccaccttcacgaagtttg--acactataacttg-gggatgtttcaaaatccgcatca 32105672  T
Q  168 gtatacatgtttgatgttggactgtttggctcgaaagagacg 209  Q
    |      | | ||||||||||||||||| |||||||||||||    
T  32105671 g------tctctgatgttggactgtttgtctcgaaagagacg 32105636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 215
Target Start/End: Original strand, 52245148 - 52245305
Alignment:
Q  53 tcgcagcactgtgggttgtaggcgtggggttttgtatccatgttggtggtcgaatctct--caccttcacgaaatttggtactgtataacttgagggagg 150  Q
    ||||||||  ||||||||||||||||||||| ||||||| |||||| ||| ||||||||  |||||  ||||| |||    |||||||||||| ||||||    
T  52245148 tcgcagcatagtgggttgtaggcgtggggttctgtatccgtgttggcggtagaatctctcacacctgtacgaagttt--ctctgtataacttg-gggagg 52245244  T
Q  151 tttcaaaatcctcatcagtatacatgtttgatgttggactgtttggctcgaaagagacgttatgc 215  Q
    ||||| ||| ||||||||| |||     | |||| |||||| |||||||||||||||| ||||||    
T  52245245 tttcataattctcatcagtctac----ctaatgtcggactgcttggctcgaaagagacattatgc 52245305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 11351581 - 11351538
Alignment:
Q  171 tacatgtttgatgttggactgtttggctcgaaagagacgttatgc 215  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  11351581 tacatgtttgatgttggactgttt-gctcgaaagagacgttatgc 11351538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 20808996 - 20809032
Alignment:
Q  176 gtttgatgttggactgtttggctcgaaagagacgtta 212  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  20808996 gtttgatgttggactgtttgcctcaaaagagacgtta 20809032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 79 - 214
Target Start/End: Complemental strand, 7194194 - 7194065
Alignment:
Q  79 gggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctcatcagtatacatgtt 178  Q
    ||||| ||||||| |||||| |||||||| |||||| |||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||      | ||    
T  7194194 gggttctgtatccgtgttggcggtcgaatttctcacattcacgaagtttggcactctataacttgggggaggtttcaaaatcctcatcag------tttt 7194101  T
Q  179 tgatgttggactgtttggctcgaaagagacgttatg 214  Q
    ||||||||||||||||||||||||||||||||||||    
T  7194100 tgatgttggactgtttggctcgaaagagacgttatg 7194065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 63 - 213
Target Start/End: Original strand, 24688132 - 24688278
Alignment:
Q  63 gtgggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggagg-tttcaaaatcc 161  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| || |||||  || | ||||||| |||||| |||||||||||    
T  24688132 gtgggttgtaggcgtggggttttgtatccgtgttggtggtagaatctctcaccttcaccaattttggctctatttaacttg-gggaggttttcaaaatcc 24688230  T
Q  162 tcatcagtatacatgtttgatgttggactgtttggctcgaaagagacgttat 213  Q
    |||||||| |||     | ||||| |||| ||||||||||||||||||||||    
T  24688231 tcatcagtctac----ctaatgttcgactctttggctcgaaagagacgttat 24688278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 65 - 159
Target Start/End: Complemental strand, 18995538 - 18995444
Alignment:
Q  65 gggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaat 159  Q
    ||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||| ||||| ||| ||||||||| | ||||||| |||||    
T  18995538 gggttgtaggcgtggggttctgtatccgtgttggcggtcgaatctctcaccttcacgaagtttggcactatataacttgggagaggtttaaaaat 18995444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 86 - 213
Target Start/End: Original strand, 39605708 - 39605831
Alignment:
Q  86 gtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctcatcagtatacatgtttgatgtt 185  Q
    |||||| |||||| ||| |||||||||||||||||||| ||||   || ||||||||  |||||||| |||||||||||||||| |||     |||||||    
T  39605708 gtatccgtgttggcggtagaatctctcaccttcacgaagtttgactctatataacttcggggaggttgcaaaatcctcatcagtctac----ctgatgtt 39605803  T
Q  186 ggactgtttggctcgaaagagacgttat 213  Q
    ||||||||||||||||||||||||||||    
T  39605804 ggactgtttggctcgaaagagacgttat 39605831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 212
Target Start/End: Complemental strand, 23846505 - 23846362
Alignment:
Q  65 gggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctca 164  Q
    |||||||||| ||| |||| || |||| |||||||||| ||||||||||||||||| || ||||   || |||||||||   | ||||||||||||||||    
T  23846505 gggttgtaggtgtgtggttctgaatccgtgttggtggtagaatctctcaccttcactaagtttgactctatataacttggatgcggtttcaaaatcctca 23846406  T
Q  165 tcagtatacatgtttgatgttggactgtttggctcgaaagagacgtta 212  Q
    || ||     ||||||||||||||||||||||||||||||||| ||||    
T  23846405 tcggt----ctgtttgatgttggactgtttggctcgaaagagatgtta 23846362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 65 - 212
Target Start/End: Original strand, 46857528 - 46857669
Alignment:
Q  65 gggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctca 164  Q
    |||||||||||||| |||| || |||| |||||| ||| |||||||||||||||||||| ||||   || ||||||||  ||| ||||||||||||||||    
T  46857528 gggttgtaggcgtgtggttctgaatccgtgttggcggtagaatctctcaccttcacgaagtttgactctatataactt--gggtggtttcaaaatcctca 46857625  T
Q  165 tcagtatacatgtttgatgttggactgtttggctcgaaagagacgtta 212  Q
    ||     |  ||||||||||||||  ||||||||||||||||| ||||    
T  46857626 tc----gatctgtttgatgttggatcgtttggctcgaaagagatgtta 46857669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 215
Target Start/End: Original strand, 24056211 - 24056354
Alignment:
Q  66 ggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctcat 165  Q
    ||||||||| ||| |||| |||||   | |||| ||||| || ||||||||| ||| | ||| | ||| ||||||||| |||||||||||||||||||||    
T  24056211 ggttgtaggagtgaggttctgtatttgtattggcggtcggatttctcaccttgacggagtttagcactatataacttgggggaggtttcaaaatcctcat 24056310  T
Q  166 cagtatacatgtttgatgttggactgtttggctcgaaagagacgttatgc 215  Q
    | |      | |||||||||||| | ||| |||||||||||||| |||||    
T  24056311 cgg------tctttgatgttggattttttagctcgaaagagacgctatgc 24056354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 25706701 - 25706737
Alignment:
Q  175 tgtttgatgttggactgtttggctcgaaagagacgtt 211  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  25706701 tgtttgatgttggactatttggctcgaaagaggcgtt 25706737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 65 - 215
Target Start/End: Original strand, 12522261 - 12522402
Alignment:
Q  65 gggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctca 164  Q
    |||||||||||||||| |||||||||| |||||| ||||||||||||||| |||||||| ||||| ||  ||||||||| ||||||||||||||||||||    
T  12522261 gggttgtaggcgtggg-ttttgtatccgtgttggcggtcgaatctctcactttcacgaagtttggcac--tataacttgggggaggtttcaaaatcctca 12522357  T
Q  165 tcagtatacatgtttgatgttggactgtttggctcgaaagagacgttatgc 215  Q
     |||      | ||||||||||||||||||||||||||||||| |||||||    
T  12522358 ccag------tctttgatgttggactgtttggctcgaaagagatgttatgc 12522402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 65 - 215
Target Start/End: Original strand, 15819815 - 15819956
Alignment:
Q  65 gggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctca 164  Q
    ||||||||||| ||||||| |||||||  ||||  |||||||||||||||||||||||| ||||| ||| |||| |||| ||||||||||||||||||||    
T  15819815 gggttgtaggcatggggttctgtatcc--gttgc-ggtcgaatctctcaccttcacgaagtttggcactatatatcttgggggaggtttcaaaatcctca 15819911  T
Q  165 tcagtatacatgtttgatgttggactgtttggctcgaaagagacgttatgc 215  Q
    ||||      | |||||||||||||||||||||||||||||||||||||||    
T  15819912 tcag------tctttgatgttggactgtttggctcgaaagagacgttatgc 15819956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 53 - 212
Target Start/End: Complemental strand, 3330856 - 3330701
Alignment:
Q  53 tcgcagcactgtgggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtt 152  Q
    ||||||||  ||||||||||||||||||||| ||||||| |||||| ||| |||||||||||||||||||| |||    || |||||||||   | ||||    
T  3330856 tcgcagcatagtgggttgtaggcgtggggttctgtatccgtgttggcggtagaatctctcaccttcacgaagtttcactctatataacttggatgcggtt 3330757  T
Q  153 tcaaaatcctcatcagtatacatgtttgatgttggactgtttggctcgaaagagacgtta 212  Q
    ||||||||||| || ||    |||  ||||||||||||||||||||||||||||||||||    
T  3330756 tcaaaatcctcttcggt----atgcctgatgttggactgtttggctcgaaagagacgtta 3330701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 213
Target Start/End: Complemental strand, 6512980 - 6512841
Alignment:
Q  65 gggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctca 164  Q
    |||||||||||||||| || ||||||| |||||| ||||||||||||||||||||| || ||| | |||  |||||||| ||||||||||||||||||||    
T  6512980 gggttgtaggcgtggg-ttctgtatccgtgttggcggtcgaatctctcaccttcacaaagtttagcact--ataacttgggggaggtttcaaaatcctca 6512884  T
Q  165 tcagtatacatgtttgatgttggactgtttggctcgaaagagacgttat 213  Q
    ||||      | ||||||| |||||||||||||||||||||||| ||||    
T  6512883 tcag------tctttgatgctggactgtttggctcgaaagagacattat 6512841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 65 - 201
Target Start/End: Complemental strand, 38111990 - 38111861
Alignment:
Q  65 gggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctca 164  Q
    |||||||||| |||||||| ||||||| |||||| ||||||||||| |||||||||||| ||||  ||| ||||||||| ||| ||||||||||||| ||    
T  38111990 gggttgtaggtgtggggttctgtatccgtgttggcggtcgaatctcccaccttcacgaagtttgacactatataacttg-ggggggtttcaaaatccaca 38111892  T
Q  165 tcagtatacatgtttgatgttggactgtttggctcga 201  Q
    ||||||      |||||||||||||||||||||||||    
T  38111891 tcagta------tttgatgttggactgtttggctcga 38111861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 65 - 215
Target Start/End: Complemental strand, 37978929 - 37978785
Alignment:
Q  65 gggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctca 164  Q
    |||||||||| ||| |||| |||||   |||||| ||||| || ||||||||||||||| ||| | ||| ||||||||| ||||||||||||||||||||    
T  37978929 gggttgtaggagtgaggttctgtatttgtgttggcggtcggatttctcaccttcacgaagtttagcactatataacttgggggaggtttcaaaatcctca 37978830  T
Q  165 tcagtatacatgtttgatgttggactgtttggctcgaaagagacgttatgc 215  Q
    ||||      | |||||||||||| ||||| |||||||||||||| |||||    
T  37978829 tcag------tctttgatgttggattgtttagctcgaaagagacgctatgc 37978785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 213
Target Start/End: Original strand, 6748241 - 6748380
Alignment:
Q  65 gggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctca 164  Q
    |||||||||||||||| || ||||||| |||||| |||| |||||||||||||||| || ||||| |||  |||||||| ||||||||||||||||||||    
T  6748241 gggttgtaggcgtggg-ttctgtatccgtgttggcggtcaaatctctcaccttcacaaagtttggcact--ataacttgggggaggtttcaaaatcctca 6748337  T
Q  165 tcagtatacatgtttgatgttggactgtttggctcgaaagagacgttat 213  Q
    ||||      | ||||||| |||| ||||| ||||||||||||| ||||    
T  6748338 tcag------tctttgatgatggattgtttagctcgaaagagacattat 6748380  T

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Target: chr3; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 57 - 185
Target Start/End: Complemental strand, 4611895 - 4611768
Alignment:
Q  57 agcactgtgggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaa 156  Q
    ||||| || |||||||||||||| ||||||||| |||||| | |||||||||| ||||||||| | | | ||| ||| | ||||||| ||||||||||||    
T  4611895 agcacagttggttgtaggcgtggtgttttgtatacatgtttgcggtcgaatctttcaccttcaag-agtctggcactatgtaacttgggggaggtttcaa 4611797  T
Q  157 aatcctcatcagtatacatgtttgatgtt 185  Q
    ||||||||||||| ||| | |||||||||    
T  4611796 aatcctcatcagtctacctatttgatgtt 4611768  T

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Target: chr3; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 67 - 213
Target Start/End: Complemental strand, 6473758 - 6473621
Alignment:
Q  67 gttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctcatc 166  Q
    |||||||||||||| || ||||||| |||||| |||| |||||||||||||||  || ||||| |||  |||||||||||||||||||||||||||||||    
T  6473758 gttgtaggcgtggg-ttctgtatccgtgttggcggtcaaatctctcaccttcaaaaagtttggcact--ataacttgagggaggtttcaaaatcctcatc 6473662  T
Q  167 agtatacatgtttgatgttggactgtttggctcgaaagagacgttat 213  Q
    ||      | ||||||| |||||| ||| ||||||||||||| ||||    
T  6473661 ag------tctttgatgatggactctttagctcgaaagagacattat 6473621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 213
Target Start/End: Complemental strand, 6473238 - 6473104
Alignment:
Q  65 gggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctca 164  Q
    |||||||||||||||| || ||||||| |||||| ||||||||||||||||||||| || ||||| ||  |||||||||     ||||||||||||||||    
T  6473238 gggttgtaggcgtggg-ttctgtatccgtgttggcggtcgaatctctcaccttcacaaagtttggcac--tataacttg-----ggtttcaaaatcctca 6473147  T
Q  165 tcagtatacatgtttgatgttggactgtttggctcgaaagagacgttat 213  Q
    ||||      | ||||||| |||||||||||||||||||||||| ||||    
T  6473146 tcag------tctttgatgatggactgtttggctcgaaagagacattat 6473104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 68 - 207
Target Start/End: Original strand, 40474994 - 40475124
Alignment:
Q  68 ttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctcatca 167  Q
    |||||||||||||| |  |||||| |||||| ||||||||||| |||||||||||| ||||  ||  ||||||||| |||| |||||||||||| |||||    
T  40474994 ttgtaggcgtggggatccgtatccgtgttggcggtcgaatctcccaccttcacgaagtttg--acactataacttg-gggatgtttcaaaatccgcatca 40475090  T
Q  168 gtatacatgtttgatgttggactgtttggctcgaaagaga 207  Q
    |      | | ||||||||||||||||| |||||||||||    
T  40475091 g------tctctgatgttggactgtttgtctcgaaagaga 40475124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 209
Target Start/End: Complemental strand, 818342 - 818210
Alignment:
Q  68 ttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctcatca 167  Q
    |||||||||||||| |  |||||| |||||| ||||||||||| |||||||||||| ||||  ||  ||||||||| |||| |||||||||||| |||||    
T  818342 ttgtaggcgtggggatccgtatccgtgttggcggtcgaatctcccaccttcacgaagtttg--acactataacttg-gggatgtttcaaaatccgcatca 818246  T
Q  168 gtatacatgtttgatgttggactgtttggctcgaaagagacg 209  Q
    |      | | |||||||||| |||||| |||||||||||||    
T  818245 g------tctctgatgttggattgtttgtctcgaaagagacg 818210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 128
Target Start/End: Complemental strand, 11985266 - 11985203
Alignment:
Q  65 gggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttg 128  Q
    |||||||||| ||||||||  |||| | |||||| | |||||||||||||||||||||| ||||    
T  11985266 gggttgtaggtgtggggttccgtattcgtgttggcgatcgaatctctcaccttcacgaagtttg 11985203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 68 - 213
Target Start/End: Original strand, 34967647 - 34967786
Alignment:
Q  68 ttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctcatca 167  Q
    ||||||||||| |||| ||||||| |||||| ||| |||||||||||||||||||| |||||  || ||||||||  |||| ||||||||||||||||||    
T  34967647 ttgtaggcgtgaggttatgtatccgtgttggcggtagaatctctcaccttcacgaagtttggctctatataactt-cggga-gtttcaaaatcctcatca 34967744  T
Q  168 gtatacatgtttgatgttggactgtttggctcgaaagagacgttat 213  Q
    || |||     |||||||||||||||||||||||||||||||||||    
T  34967745 gtctac----ctgatgttggactgtttggctcgaaagagacgttat 34967786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 13151724 - 13151647
Alignment:
Q  54 cgcagcactgtgggttgtaggcgt-ggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggt 130  Q
    |||||||| ||||||||||||| | |||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  13151724 cgcagcacagtgggttgtaggcattggggttctgtatccgtgttggtggtcgaatctctcaccttcacgaaatttggt 13151647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 65 - 215
Target Start/End: Complemental strand, 22998556 - 22998412
Alignment:
Q  65 gggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctc-accttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctc 163  Q
    |||||||||| |||||| |  |||||| |||||||||||||||||| | ||||||||||| ||||| ||| ||| ||||| ||||  ||| ||||| | |    
T  22998556 gggttgtaggggtggggatccgtatccgtgttggtggtcgaatctccccaccttcacgaagtttggcactatattacttg-gggatattttaaaattcgc 22998458  T
Q  164 atcagtatacatgtttgatgttggactgtttggctcgaaagagacgttatgc 215  Q
    |||||| |      ||||||||||||||||||||||||||||||||||||||    
T  22998457 atcagtct------ttgatgttggactgtttggctcgaaagagacgttatgc 22998412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 7406590 - 7406550
Alignment:
Q  175 tgtttgatgttggactgtttggctcgaaagagacgttatgc 215  Q
    |||||||||||||||| |||||||| |||||||||||||||    
T  7406590 tgtttgatgttggactttttggctcaaaagagacgttatgc 7406550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0625 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 65 - 159
Target Start/End: Original strand, 1118 - 1212
Alignment:
Q  65 gggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaat 159  Q
    ||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||| ||||| ||| ||||||||| | ||||||| |||||    
T  1118 gggttgtaggcgtggggttctgtatccgtgttggcggtcgaatctctcaccttcacgaagtttggcactatataacttgggagaggtttaaaaat 1212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 94 - 213
Target Start/End: Complemental strand, 19538 - 19423
Alignment:
Q  94 gttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctcatcagtatacatgtttgatgttggactgtt 193  Q
    ||||| ||| |||||||||||||| ||||| |||||  || ||||||||| ||||||||||||||||||||||||| |||     ||||| |||||||||    
T  19538 gttggcggtagaatctctcacctttacgaagtttggctctatataacttgggggaggtttcaaaatcctcatcagtctac----ctgatgctggactgtt 19443  T
Q  194 tggctcgaaagagacgttat 213  Q
    ||||||||||||||||||||    
T  19442 tggctcgaaagagacgttat 19423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 65 - 228
Target Start/End: Original strand, 21916 - 22073
Alignment:
Q  65 gggttgtaggcgtggggttttgtatccatgttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctca 164  Q
    ||||||||||||||||||| || |||| |||||| ||| |||||||||||||||||||| ||||   || |||||||||   | ||||||||||||||||    
T  21916 gggttgtaggcgtggggttctgaatccgtgttggcggtagaatctctcaccttcacgaagtttgactctatataacttggatgcggtttcaaaatcctca 22015  T
Q  165 tcagtatacatgtttgatgttggactgtttggctcgaaagagacgttatgcacttgttgatgtc 228  Q
    || ||     ||| |||||||||||||||||||| ||||| || |||| |  ||||||||||||    
T  22016 tcggt----ctgtctgatgttggactgtttggcttgaaagtgatgttagg--cttgttgatgtc 22073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 95 - 213
Target Start/End: Complemental strand, 93278 - 93165
Alignment:
Q  95 ttggtggtcgaatctctcaccttcacgaaatttggtactgtataacttgagggaggtttcaaaatcctcatcagtatacatgtttgatgttggactgttt 194  Q
    |||| ||| |||||||||||||||||||| |||||  || ||||| ||| ||||| |||||||||| |||||||| |||     ||||||||||||||||    
T  93278 ttggcggtagaatctctcaccttcacgaagtttggctctatataatttg-gggagatttcaaaatcatcatcagtctac----ctgatgttggactgttt 93184  T
Q  195 ggctcgaaagagacgttat 213  Q
    |||||||||||||||||||    
T  93183 ggctcgaaagagacgttat 93165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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