View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11739_high_3 (Length: 485)
Name: NF11739_high_3
Description: NF11739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11739_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 31841281 - 31841774
Alignment:
| Q |
1 |
ctgcatagcgtacaatattactacgtgtagtaaatgagatacgatagtataaagttataaacttaattttacattggccatgttgagtgtttttcacaac |
100 |
Q |
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| T |
31841281 |
ctgcatagcgtacaatactactacgtgtagtaaatgatatacgatagtataaagttataaacttaattttacattggccatgttgagtgttgttcacaaa |
31841380 |
T |
|
| Q |
101 |
atatattaattaattttggtctcttcttttgtgttgtgaatagtgtttaacatatcattcattcattaactagttattaattattctgttctggtaacag |
200 |
Q |
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| T |
31841381 |
atatatta----attttggtctcttcttttgtgttgtgaatagtgtttaacatatcattcattcattaactagttattaattattctgttctggtaacag |
31841476 |
T |
|
| Q |
201 |
ataacttatttaacaagcnnnnnnnntaactgcagaggtttcagtcttcagatatagtaatacgagtgatgctctaattgtgacatcataagttgcatta |
300 |
Q |
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| T |
31841477 |
ataacttatttaacaagcaaaaaaaa-aactgcagaggtttcagtcttcagatatagtaatacgagtgatgctctaattgtgacatcataagttgcatta |
31841575 |
T |
|
| Q |
301 |
tt-----------------atacattaattgtacacacgtgcactctcatgtacacttcattatctcattgatcttgttattttgtcatgctattgacaa |
383 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31841576 |
ttatacataagtaagaccgatacattaattgtacacacgtgcactctcatgtacacttcattatctcattgatcttgttattttttcatgctattgacaa |
31841675 |
T |
|
| Q |
384 |
agatgatgcatatactcattattatgtgtttttggattttgctgttttgatgcttcatgatcaatattcaata------agtacacttttactctctgc |
476 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31841676 |
agatgatgcatatattcattattatgtgtttttggattttgctgttttgatgcttcatgatcaatattcaatatgacatagtacacttttactctctgc |
31841774 |
T |
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