View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11739_high_8 (Length: 311)
Name: NF11739_high_8
Description: NF11739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11739_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 5069498 - 5069215
Alignment:
| Q |
18 |
aaaagttattattccaaatcaagattagta----ctccacagcgaaaaggtacaaggaacattctaaaaagtgcaattgaagtaaatgaatgtatcttct |
113 |
Q |
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| T |
5069498 |
aaaagttattattccaaatcaagattagtaagtactccacagcgaaaaggtgcaaggaacattctaaaaagtgcaattgaagtaaatgaatgtatcttct |
5069399 |
T |
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| Q |
114 |
gtaaaatatcaagatgtaactcttctttcaatctaggcatatagaatgtattactgtcttgattacgcttcctacaaggtggaaattcatattttacatg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5069398 |
gtaaaatatcaagatgtaactcttctttcaatctaggcatatagaatgtattactgtcttgattacgcttcctacagggtggaaattcatattttacatg |
5069299 |
T |
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| Q |
214 |
ggatttcaatggacctgatattttgatacttaacaatgaattagttttcccatgagcactagtattataaggtcattttttcat |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5069298 |
ggatttcaatggacctgatattttgatacttaacaatgaattaattttcccatgagcactagtattataaggtcattttttcat |
5069215 |
T |
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