View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11739_low_1 (Length: 881)
Name: NF11739_low_1
Description: NF11739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11739_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 82 - 651
Target Start/End: Original strand, 26642172 - 26642734
Alignment:
| Q |
82 |
tttgttttgtagatggctggatcattctgaattcactgatgcctcaggccaaccagttcaatatcaaatataagtgtccctaaagttgaaccttcaccat |
181 |
Q |
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| T |
26642172 |
tttgtttactagattgctggatcattctgaattcactgatgcctcaagccaaccagttcaatatcaaatataagtgtccctaaagttgaaccttcaccat |
26642271 |
T |
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| Q |
182 |
ttgcaagtcgagtcggattaaaaatggtagtgaacagcctctgcctgtcaaagaacttttttattttatttgaaagaagacattaaaaattagtactata |
281 |
Q |
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| T |
26642272 |
ttgcaagtcgagtcggattaaaaatggtagtgaacagcctctgcctgtcaaagaactttttt-tttta----aaagaatacaataaaaattagtactgta |
26642366 |
T |
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| Q |
282 |
gtcgtcaatcaaacgtatataattagctccaactagagaatatatatatgtgcgcgcgcatgtgtttgtgatgaaaaaacctatcaatttaggtaatgta |
381 |
Q |
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| T |
26642367 |
gtggtcaatcaaacgtatataattagctccaactagagaatatatgt--gtgcgcgcgcgtgtgtttgtgatgaaaaaacctatcaatttagataatgta |
26642464 |
T |
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| Q |
382 |
tactgtatatatgcataaaatcaaacgttactagataattctggatcataaaaggattcttacattaggcgggataggttcctgtgatgtgttctgatac |
481 |
Q |
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| T |
26642465 |
tattgtatatatgcataaaatcaaacgttactaggtaattctggatcataaaaggattcttacattaggtgggataggttcctgtgatgtgttctgatac |
26642564 |
T |
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| Q |
482 |
ccaagtgatggaggtatgacgactctacgaataccaccgactttcattgatctcactgcgacatcaattccagcaattacctgaacacaaacatttcatt |
581 |
Q |
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| T |
26642565 |
ccaagtgatggaggtatgacgactctacgaataccaccgactttcattgatcgcactgccacatcaattccagcaattacctgaacac--acatttcttt |
26642662 |
T |
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| Q |
582 |
ctcatataattaacttctttcttagtatgac--atgataaaggcatgggaattaatttaattacaacttttc |
651 |
Q |
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| T |
26642663 |
ctcatatgattaacttctttataagtatgacatatgataaaggcatagaaattaatttaattacaacttttc |
26642734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 26642078 - 26642141
Alignment:
| Q |
12 |
tcatcaatactatcctgcaattcacaaatcaataaatgctggtacatgtacagttacactatat |
75 |
Q |
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| T |
26642078 |
tcattaatactattctgcaattcacaaatttataaatgctggtacatgtacagttacactatat |
26642141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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