View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11739_low_13 (Length: 261)
Name: NF11739_low_13
Description: NF11739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11739_low_13 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 261
Target Start/End: Original strand, 6033380 - 6033626
Alignment:
| Q |
15 |
atgaatgaaaagaaaaggaatgagctaatctaaatagaaagaaataacaacattcttcaacaaccaaattaatcatcatgggttcggtagaacgagggaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6033380 |
atgaatgaaaagaaaaggaatgagctaatctaaatagaaagaaataacaacgttcttcaacaaccaaattaatcatcatgggttcggtagaacgagggaa |
6033479 |
T |
|
| Q |
115 |
gatccattggagcgtatacgacggcgtaaagataatcgctgcaacaccagaagctctgatgtcagaaattgattcagcaatttcgaatctggaatataca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6033480 |
gatccattggagcgtatacgacggcgtaaagataatcgctgcaacaccagaagctctgatgtcagaaattgattcagcaatttcgaatctggaatataca |
6033579 |
T |
|
| Q |
215 |
cgcgccaccgccacgctcgacgccgatcaattacacgacgcacgcac |
261 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6033580 |
cgcgccaccgccacgctcgacgccgaacaattacacgacgcacgcac |
6033626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University