View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11739_low_18 (Length: 241)
Name: NF11739_low_18
Description: NF11739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11739_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 51881448 - 51881224
Alignment:
| Q |
18 |
ggattatactattaatatttcattaccacatatgtgacttgattattattccatttatcctatatagtacgattattatgttacattactaacacggaca |
117 |
Q |
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| T |
51881448 |
ggattatactattaatatttcatgaccacatatgtgacttgattattattccatttatcctatatagtacgattattatgttacattactaacactgaca |
51881349 |
T |
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| Q |
118 |
aaacttagaaggttgataatatacacacgcttacagtaact----cacataacttaacatatattgggtccaaatcctatatatccattagctccatcca |
213 |
Q |
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| T |
51881348 |
aaacttagaaggttgataatatacacacgcttacagtaactcacacacataacttaacatatattgggtccaaatcctatatatccattagctccatcca |
51881249 |
T |
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| Q |
214 |
ctgaaatttcaatcccttcttgctg |
238 |
Q |
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||||||||||||||||||||||||| |
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| T |
51881248 |
ctgaaatttcaatcccttcttgctg |
51881224 |
T |
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