View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11739_low_3 (Length: 641)
Name: NF11739_low_3
Description: NF11739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11739_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 596; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 10 - 625
Target Start/End: Original strand, 38399910 - 38400525
Alignment:
| Q |
10 |
caaagggcggttataaacaatgctgccattttgaccaagtgagttacaaggaccagtaaaccagcagataccataacatatgatgacaaatccattgaaa |
109 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38399910 |
caaagggcagttataaataatgctgccattttgaccaagtgagttgcaaggaccagtaaaccagcagataccataacatatgatgacatatccattgaaa |
38400009 |
T |
|
| Q |
110 |
aatccgctttaaacacacaagtagttacaaagataggcaaaaataatgttgtaccaaagaactgaagcttcttaaccaatgcagatcctaaaggaggtcc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38400010 |
aatccgctttaaacacacaagtagttacaaagataggcaaaaataatgttgtaccaaagaactgaagcttcttaaccaatgcagatcctagaggaggtcc |
38400109 |
T |
|
| Q |
210 |
ttcaggaacagacagtcccaaaatgaaagctcctaagccaaataattgattaatcttaactgacaaaataccaagaacaaaaaccattgaaatgataaca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38400110 |
ttcaggaacagacagtcccaaaatgaaagctcctaagccaaataattgattaatcttaactgacaaaataccaagaacaaaaaccattgaaatgataaca |
38400209 |
T |
|
| Q |
310 |
taaatgtaactatccttcacaggtcttccttctggtgtacgtttgatgatccaaaacattattggtctacataccaatggaattaatgcaattaatgtat |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38400210 |
taaatgtaactatccttcacaggtcttccttctggtgtacgtttgatgatccaaaacattattggtctacataccaatggaattaatgcaattaatgtat |
38400309 |
T |
|
| Q |
410 |
aaagtaagatcatgtttcttaaaatcggtgtcgaattagaactagtctgaacagcaataatattggctgaaataattgtggttagtatgtcacagaccaa |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38400310 |
aaagtaagatcatgtttcttaaaatcggtgtcgaattagaactagtctgaacagcaataatattggctgaaataattgtggttagtatgtcacagaccaa |
38400409 |
T |
|
| Q |
510 |
agccgaggacaaagacaatctaccaagctctgagttttggatttgaagttcacttagaagtgaagcgattgttgaaaattgacttagactgtgagataac |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38400410 |
agccgaggacaaagacaatctaccaagctctgagttttggatttgaagttcacttagaagtgaagcgattgttgaaaattgacttagactgtgagataac |
38400509 |
T |
|
| Q |
610 |
gttgccactatgattc |
625 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
38400510 |
gttgccactatgattc |
38400525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 10 - 622
Target Start/End: Original strand, 38391321 - 38391933
Alignment:
| Q |
10 |
caaagggcggttataaacaatgctgccattttgaccaagtgagttacaaggaccagtaaaccagcagataccataacatatgatgacaaatccattgaaa |
109 |
Q |
| |
|
|||||| | |||||||| |||||||||||||||||||||||||||||||||||| |||||||| | | ||||| | | ||||||| ||||||||||||| |
|
|
| T |
38391321 |
caaaggacagttataaataatgctgccattttgaccaagtgagttacaaggaccgctaaaccagtatacaccatcatagatgatgaaaaatccattgaaa |
38391420 |
T |
|
| Q |
110 |
aatccgctttaaacacacaagtagttacaaagataggcaaaaataatgttgtaccaaagaactgaagcttcttaaccaatgcagatcctaaaggaggtcc |
209 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||| |||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38391421 |
aatctgctttcaacacacaagttgttacaaagattggcaaaaagaatgttgtactaaaaaactgaagcttcttaaccaatgcagatcctaaaggaggtcc |
38391520 |
T |
|
| Q |
210 |
ttcaggaacagacagtcccaaaatgaaagctcctaagccaaataattgattaatcttaactgacaaaataccaagaacaaaaaccattgaaatgataaca |
309 |
Q |
| |
|
||||||||||||||||||||||| |||| |||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38391521 |
ttcaggaacagacagtcccaaaacgaaaactcccaagacaaattcttgattaatcttaactgacaaaataccaagaacaaaaaccattgaaatgataaca |
38391620 |
T |
|
| Q |
310 |
taaatgtaactatccttcacaggtcttccttctggtgtacgtttgatgatccaaaacattattggtctacataccaatggaattaatgcaattaatgtat |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||| ||| ||| |
|
|
| T |
38391621 |
taaatgtaactatccttcacaggtcttccttctggtgtatgtttgatgatccaaaacattattggtctacataccaatggtattaatacaaacaatatat |
38391720 |
T |
|
| Q |
410 |
aaagtaagatcatgtttcttaaaatcggtgtcgaattagaactagtctgaacagcaataatattggctgaaataattgtggttagtatgtcacagaccaa |
509 |
Q |
| |
|
||||||||| |||||||| |||| | ||| ||| || ||||||| || ||||| || ||||| |||||||| ||| |||||||||||||||||||| |
|
|
| T |
38391721 |
aaagtaagaatatgtttctcaaaagtgtcgtcaaatcaggactagtcataagagcaacaaaattggttgaaataactgttgttagtatgtcacagaccaa |
38391820 |
T |
|
| Q |
510 |
agccgaggacaaagacaatctaccaagctctgagttttggatttgaagttcacttagaagtgaagcgattgttgaaaattgacttagactgtgagataac |
609 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38391821 |
agccgaggacaaagttaatctaccaagctctgagttttggatttgaagttcacttaggagtgaagagattgttgaaaattgacttagactgtgagataac |
38391920 |
T |
|
| Q |
610 |
gttgccactatga |
622 |
Q |
| |
|
||||||| |||| |
|
|
| T |
38391921 |
attgccaccatga |
38391933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 10 - 617
Target Start/End: Original strand, 38382463 - 38383070
Alignment:
| Q |
10 |
caaagggcggttataaacaatgctgccattttgaccaagtgagttacaaggaccagtaaaccagcagataccataacatatgatgacaaatccattgaaa |
109 |
Q |
| |
|
|||||||| |||||||| |||||| |||||||||||||||||||||||||||| |||||||| | | ||||||||| ||||||| | ||||||||||| |
|
|
| T |
38382463 |
caaagggcagttataaagcatgctgtcattttgaccaagtgagttacaaggaccgctaaaccagtatacaccataacagatgatgaaacatccattgaaa |
38382562 |
T |
|
| Q |
110 |
aatccgctttaaacacacaagtagttacaaagataggcaaaaataatgttgtaccaaagaactgaagcttcttaaccaatgcagatcctaaaggaggtcc |
209 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||| |||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38382563 |
aatctgctttcaacacacaagtggttacaaagattggcaaaaagaatgttgtacaaaaaaactgaagcttcttaaccaatgcagatcctaaaggaggtcc |
38382662 |
T |
|
| Q |
210 |
ttcaggaacagacagtcccaaaatgaaagctcctaagccaaataattgattaatcttaactgacaaaataccaagaacaaaaaccattgaaatgataaca |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
38382663 |
ttcaggaacagacagtcccaaaatgaaagctcctatggcaaattcttgattaatcttaactgacaaaatgccaaaaacaaaaaccattgaaatgataaca |
38382762 |
T |
|
| Q |
310 |
taaatgtaactatccttcacaggtcttccttctggtgtacgtttgatgatccaaaacattattggtctacataccaatggaattaatgcaattaatgtat |
409 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
38382763 |
taaaggtaactatccttcacaggtcttccttctggtgtacgtttgatgatccaaaacattattggtctacataccaatggaattaatacaattaatatat |
38382862 |
T |
|
| Q |
410 |
aaagtaagatcatgtttcttaaaatcggtgtcgaattagaactagtctgaacagcaataatattggctgaaataattgtggttagtatgtcacagaccaa |
509 |
Q |
| |
|
||||||||| | |||||| |||| | ||| |||| || ||||||| || | ||| ||||||| | |||||| | ||||||||||||||||||||| |
|
|
| T |
38382863 |
aaagtaagaataagtttctcaaaagtgttgtggaatcaggactagtcacaagaacaacaatattgctttgaataatcgcggttagtatgtcacagaccaa |
38382962 |
T |
|
| Q |
510 |
agccgaggacaaagacaatctaccaagctctgagttttggatttgaagttcacttagaagtgaagcgattgttgaaaattgacttagactgtgagataac |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||| |||| |
|
|
| T |
38382963 |
agccgaggacaaagacaatctaccaagctctgagttttggatttgaagttcacttaggagtgaagcgattgttccaaatgtacttagactgtgagttaac |
38383062 |
T |
|
| Q |
610 |
gttgccac |
617 |
Q |
| |
|
||||||| |
|
|
| T |
38383063 |
attgccac |
38383070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 10 - 602
Target Start/End: Complemental strand, 37840171 - 37839579
Alignment:
| Q |
10 |
caaagggcggttataaacaatgctgccattttgaccaagtgagttacaaggaccagtaaaccagcagataccataacatatgatgacaaatccattgaaa |
109 |
Q |
| |
|
||||| || |||||||| |||||| ||||||||||| |||| || | ||||||| ||||||| ||| ||||||| |||||||| |||||||||||||| |
|
|
| T |
37840171 |
caaagagcagttataaaacatgctgtcattttgaccatgtgaattgctaggaccactaaaccattagacaccataatatatgatgtcaaatccattgaaa |
37840072 |
T |
|
| Q |
110 |
aatccgctttaaacacacaagtagttacaaagataggcaaaaataatgttgtaccaaagaactgaagcttcttaaccaatgcagatcctaaaggaggtcc |
209 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
37840071 |
aatcagctttcaacacacaagtagttacaaagataggcaaaaagaatgttgtaccaaagaactgaagcttcttaaccaatgtagatcctaaaggagctcc |
37839972 |
T |
|
| Q |
210 |
ttcaggaacagacagtcccaaaatgaaagctcctaagccaaataattgattaatcttaactgacaaaataccaagaacaaaaaccattgaaatgataaca |
309 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||| ||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
37839971 |
ttcaggaacagacagtcccaaaatgaaggctcctaagacaaattcttgattaatcttaactgaaaaaataccaagaagaaaaaccgttgaaatgataaca |
37839872 |
T |
|
| Q |
310 |
taaatgtaactatccttcacaggtcttccttctggtgtacgtttgatgatccaaaacattattggtctacataccaatggaattaatgcaattaatgtat |
409 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| | |
|
|
| T |
37839871 |
taaatgtaactatctttcacaggtcttccttctggtgtatgtttgatgatccaaaacattattggtctacataccaatggaattaatacaaaaaatatga |
37839772 |
T |
|
| Q |
410 |
aaagtaagatcatgtttcttaaaatcggtgtcgaattagaactagtctgaacagcaataatattggctgaaataattgtggttagtatgtcacagaccaa |
509 |
Q |
| |
|
||||||||| || |||||||| | | || ||||||| |||||||| || ||||| |||||||| |||||||| |||| | |||||||| |||||| |
|
|
| T |
37839771 |
aaagtaagaatatatttcttaagagtgccgtagaattaggactagtcttaagagcaacaatattggttgaaataactgtgaccaatatgtcactgaccaa |
37839672 |
T |
|
| Q |
510 |
agccgaggacaaagacaatctaccaagctctgagttttggatttgaagttcacttagaagtgaagcgattgttgaaaattgacttagactgtg |
602 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| ||||||| |||||||||||||||||| |
|
|
| T |
37839671 |
agccgaggataaagacaatctaccaagctcagagttttgaatttgaagttcacttagtagtgaagcaattgttgcaaattgacttagactgtg |
37839579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 482 - 604
Target Start/End: Complemental strand, 37845289 - 37845167
Alignment:
| Q |
482 |
taattgtggttagtatgtcacagaccaaagccgaggacaaagacaatctaccaagctctgagttttggatttgaagttcacttagaagtgaagcgattgt |
581 |
Q |
| |
|
|||||||||| ||||| || | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
37845289 |
taattgtggtcagtatatcgctgaccaaagccgatgacaaagacaatctaccaagctctgagttttggatttgaagttcacttaggagtgaagcaattgt |
37845190 |
T |
|
| Q |
582 |
tgaaaattgacttagactgtgag |
604 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
37845189 |
tgcaaattgacttagactgtgag |
37845167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 124 - 294
Target Start/End: Complemental strand, 37831920 - 37831745
Alignment:
| Q |
124 |
acacaagtagttacaaagataggcaaaaataatgttgtaccaaagaactgaagcttcttaaccaatgcagatcctaaaggaggtccttcaggaacagac- |
222 |
Q |
| |
|
||||| |||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||| || |
|
|
| T |
37831920 |
acacaggtagatacaaagatagaaaaaaataatgttggaccaaagaactgaagcttcttaaccaacacagatgttaaaggaggtccttcacgaacaaaca |
37831821 |
T |
|
| Q |
223 |
---agtcccaaaatgaaagctcctaagccaaataattgattaatcttaactg-acaaaataccaagaacaaaaacc |
294 |
Q |
| |
|
|||||||||| ||||||||||||| |||| ||||| |||||||| | | ||||||||||||||||||||| |
|
|
| T |
37831820 |
aatagtcccaaaacgaaagctcctaagataaattcttgatctatcttaaccgaaaaaaataccaagaacaaaaacc |
37831745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 35298957 - 35299011
Alignment:
| Q |
158 |
ttgtaccaaagaactgaagcttcttaaccaatgcagatcctaaaggaggtccttc |
212 |
Q |
| |
|
|||| |||||||| | ||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
35298957 |
ttgtcccaaagaattcaagcttcctaaccaatgcagatcctaatggaggtccttc |
35299011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 370
Target Start/End: Original strand, 35299099 - 35299169
Alignment:
| Q |
300 |
aatgataacataaatgtaactatccttcacaggtcttccttctggtgtacgtttgatgatccaaaacatta |
370 |
Q |
| |
|
||||||| |||| ||||||| ||| | |||||||||||||||| ||| || |||||||||||||||||| |
|
|
| T |
35299099 |
aatgataccatagatgtaaccatcatccacaggtcttccttctttagtatgtctgatgatccaaaacatta |
35299169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 370
Target Start/End: Complemental strand, 5622628 - 5622550
Alignment:
| Q |
292 |
accattgaaatgataacataaatgtaactatccttcacaggtcttccttctggtgtacgtttgatgatccaaaacatta |
370 |
Q |
| |
|
|||||| |||||||| |||| ||||||| ||| | |||||||||||||||| ||| || |||||||||||||||||| |
|
|
| T |
5622628 |
accattaaaatgataccatagatgtaaccatcatccacaggtcttccttctttagtatgtctgatgatccaaaacatta |
5622550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University