View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11739_low_7 (Length: 361)
Name: NF11739_low_7
Description: NF11739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11739_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 31841272 - 31841018
Alignment:
| Q |
1 |
gcaggacctgactcggttaatttatattgtacgtacgtatataaatgtacaaaatatcatgtatctatatcataaatgtagtgagtgatatcacggttgg |
100 |
Q |
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| T |
31841272 |
gcaggacctgactcggttaatttatattgtacgtacgtatataaatgtacagaatatcatgtatctatatcataaatgtaatgagtgatatcacggttgg |
31841173 |
T |
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| Q |
101 |
agtagaattactgctcaacttttactacttgcatgattcataactatattatttgctgcattatatatatccacgtgcatgcaaacagaacctcttctgt |
200 |
Q |
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| T |
31841172 |
agtagaattactgctcaacttttactacttgcatgattcataactatattatttgctgcattatatatatccacgtgcatgcaaacagaacctcttctgt |
31841073 |
T |
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| Q |
201 |
gtattttcctccgtgcgtgcagacttgttctttctattttgagctgctgatcaag |
255 |
Q |
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| T |
31841072 |
gtattttcctccgtgcgtgcagacttgttctttctattttgagctgctgatcaag |
31841018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 253 - 348
Target Start/End: Complemental strand, 31840409 - 31840316
Alignment:
| Q |
253 |
aagttttaatggagctatggttatttagtttgagcaactgaaattttgtttctannnnnnnaattagctatggaaaagttgacatatgtatatatt |
348 |
Q |
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| T |
31840409 |
aagttttaatggagct--ggttatttagtttgagcaactgaaattttgtttctatttttttaattagctatggaaaagttgacatatgtatatatt |
31840316 |
T |
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