View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11739_low_8 (Length: 339)
Name: NF11739_low_8
Description: NF11739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11739_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 38 - 223
Target Start/End: Complemental strand, 1570309 - 1570129
Alignment:
| Q |
38 |
tggtttaatgaatccttcgcaccttaaccattcggttccacccaccactaatcttaaattgaagatatcgacatcttacaaaaaggagtgtgcaatccca |
137 |
Q |
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| T |
1570309 |
tggtttaatgaatccttcgcaccttaaccattcggttccacccaccactaatcttaaattgaagatatcgacatcttacaaa-----gtgtgcaatccca |
1570215 |
T |
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| Q |
138 |
catgttgacacactcatcaacacttcaacaaagtagttcttctgtccaatcccatttgacaaaacccttgttaagtaagggattac |
223 |
Q |
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| T |
1570214 |
catgttgccacattcatcaacacttcaacaaagtagttcttcagtccaatcccatttgacaaaacccttgttaagtaagggtttac |
1570129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 1558476 - 1558435
Alignment:
| Q |
298 |
aaaaagctagaatcaacgtcatctgaagtcagagtcttctca |
339 |
Q |
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| T |
1558476 |
aaaaagctagaatcaacttcatctgaagtcagagtcttctca |
1558435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 30177349 - 30177443
Alignment:
| Q |
118 |
aaaaggagtgtgcaatcccacatgttgacacactcatcaacacttcaacaaagtagttcttctgtccaatcccatttgacaaaacccttgttaag |
212 |
Q |
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| T |
30177349 |
aaaaggagtgtgcaatcccacatgttgtcacactcatcaacacttcaacaaagtagttcttatgtccagtcccattcgacaaaacccttggtaag |
30177443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 30177191 - 30177219
Alignment:
| Q |
1 |
tctcatgcttcctaaaagcaaacaatggt |
29 |
Q |
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| T |
30177191 |
tctcatgcttcctaaaagcaaacaatggt |
30177219 |
T |
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