View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1173_high_3 (Length: 309)
Name: NF1173_high_3
Description: NF1173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1173_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 15241645 - 15241935
Alignment:
| Q |
1 |
tcaaattgtttcaaataataatttcgatgaattggttttaaagtggagaccactatgaggcactatctaatttattatcccttcttgttgttatatgata |
100 |
Q |
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| T |
15241645 |
tcaaattgtttcaaataat---ttcgatgaattggttttaaagtggagaccactatgaggcactatctaatttat---cccttcttgttgttatatgata |
15241738 |
T |
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| Q |
101 |
atgtgacgttaatgatgttcttttgttgcagtaaatcgtttacaatattgctgtttttcaatactctctattagcataaaatgttgtcaaataggtctat |
200 |
Q |
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| T |
15241739 |
atgtgacgttaatgatgttcttttgttgcagtaaatcgtttacaatgttg---ttttgcaatactctctattagcacaaaatgttgtcaaataggtctat |
15241835 |
T |
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| Q |
201 |
atatagtggtgtggtgtgtagttaaatttgaacaaactatcattttccgtgatctgcatttgaaaacactgatattttgttctgtgttttggtcgagtcc |
300 |
Q |
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| T |
15241836 |
a----gtggtgtggtgtgtagttaaatttgaacaaactatcattttccgtgatctgcatttgaaaacactgatattttgttctgtgttttggtcaagtct |
15241931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 34227386 - 34227444
Alignment:
| Q |
215 |
tgtgtagttaaatttgaacaaactatcattttccgtgatctgcatttgaaaacactgat |
273 |
Q |
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| T |
34227386 |
tgtgtagtgaaatttgaacaaactgttattttccatgatcggcaattgacaacactgat |
34227444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 33651744 - 33651792
Alignment:
| Q |
215 |
tgtgtagttaaatttgaacaaactatcattttccgtgatctgcatttga |
263 |
Q |
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| T |
33651744 |
tgtgtagctaaatttgaacaaactactattttctgtgatctgcaattga |
33651792 |
T |
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