View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1173_high_4 (Length: 272)
Name: NF1173_high_4
Description: NF1173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1173_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 8402545 - 8402748
Alignment:
| Q |
1 |
ttagaaaagaacatcctaagaacttcaaaagagtttcaatgtcatgtttccat--ttcaatggaaatactattttttcaacttctaacaacatggatgaa |
98 |
Q |
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| T |
8402545 |
ttagaaaagaacatcctaagaactttaaaagagtttcaatgtcatgtttccatatttcaatggaaatactaatttttcaacttcaaacaacatggatgaa |
8402644 |
T |
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| Q |
99 |
gatcatattatgagctagaacaatggtagacaaaacctaatatatcttttacataagtatcacaatatttctatatctaggttctttcttctggaacttg |
198 |
Q |
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| T |
8402645 |
gatcatattatgagctagaacaatggtagacaaaacctaatatatcttttacataagtaccacaatatttctatatctaggttctttcttctggaacttg |
8402744 |
T |
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| Q |
199 |
aaat |
202 |
Q |
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|||| |
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| T |
8402745 |
aaat |
8402748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 8403481 - 8403528
Alignment:
| Q |
197 |
tgaaatcataactggggctcatcacttgctatatgatatgtaattact |
244 |
Q |
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| T |
8403481 |
tgaaatcataactggggctcatcacttgctatatgatatgtaattact |
8403528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 8280014 - 8279942
Alignment:
| Q |
76 |
caacttctaacaacatggatgaagatcatattatgagctagaacaatggtagacaaaacctaatatatctttt |
148 |
Q |
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| T |
8280014 |
caacttcaaacaacatggatgaagatcatagtctgtgctagagcaatgataaacaaaccctaacacatctttt |
8279942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 8262366 - 8262441
Alignment:
| Q |
73 |
tttcaacttctaacaacatggatgaagatcatattatgagctagaacaatggtagacaaaacctaatatatctttt |
148 |
Q |
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| T |
8262366 |
tttcagcttcaaacaacatggatgaagatcatagtctgtgctagagcaatgataaacaaaccctaacacatctttt |
8262441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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