View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1173_high_5 (Length: 267)
Name: NF1173_high_5
Description: NF1173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1173_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 4 - 178
Target Start/End: Original strand, 17103873 - 17104047
Alignment:
| Q |
4 |
tgttggatgaagattagacgatacatattctaatattatattatgtttttctttaaaatataacttagaatacgagttgtctaatatttaatcgaacggt |
103 |
Q |
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| T |
17103873 |
tgttggatgaagattagacgatacatattctaaaattatattatatttttctttaaaatacaacttagaatacgagttgtctaatatttaatcgaacggt |
17103972 |
T |
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| Q |
104 |
ggagatttgagactgcctgaatctgtgactgcagaggatttaattccaatagactctatgtttgaaatgatgatg |
178 |
Q |
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| T |
17103973 |
ggagatttgagactgcctgaatctgtgactgcagagaatttaattccaatagactctatgtttgaaatgatgatg |
17104047 |
T |
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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 17103789 - 17103844
Alignment:
| Q |
62 |
tataacttagaatacgagttgtctaatatttaatcgaacggtggagatttgagact |
117 |
Q |
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| T |
17103789 |
tataacttagagtacgagtcgtctgatctttaatccaatggtggagatttgagact |
17103844 |
T |
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