View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1173_low_16 (Length: 262)
Name: NF1173_low_16
Description: NF1173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1173_low_16 |
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| [»] scaffold0060 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 8402493 - 8402230
Alignment:
| Q |
1 |
tcccttcaagttgggactacgaaaagaattaatattttgctaagaaattataagcaacataacaccctgagtcctaacatttcatcaaacactacatctc |
100 |
Q |
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| T |
8402493 |
tcccttcaagttgggactacgaaaagaattaatattttgctaagaaattataagcaacataacaccttgagtcctaacatttcatcaaacactacatctc |
8402394 |
T |
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| Q |
101 |
ataataaccagcatgagctatcgacattgttgagaattagaagtatggtagagtccaatgaagagaatagtagaatatactttatat----attctacca |
196 |
Q |
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| T |
8402393 |
ataataaccagcatgagctattgacattgttgagaattagaagtatggtagagtccaatgaagagaatagtagaatatactttatatagtcattctacga |
8402294 |
T |
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| Q |
197 |
gaactaatataaccaattagcaactaattataactaacggtcttcgtaagttcatctcactcga |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||| |
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| T |
8402293 |
gaactaatataaccaattagcaactaattataactaacggtctccgtaagttcagctcattcga |
8402230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 8444330 - 8444284
Alignment:
| Q |
130 |
ttgagaattagaagtatggtagagtccaatgaagagaatagtagaat |
176 |
Q |
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| T |
8444330 |
ttgagaattagaagtttggtagagtccaatgaagagaatagtagaat |
8444284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 65583 - 65629
Alignment:
| Q |
130 |
ttgagaattagaagtatggtagagtccaatgaagagaatagtagaat |
176 |
Q |
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| T |
65583 |
ttgagaattagaagtttggtagagtccaatgaagagaatagtagaat |
65629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 65686 - 65748
Alignment:
| Q |
174 |
aatatactttatata----ttctaccagaactaatataaccaattagcaactaattataacta |
232 |
Q |
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| T |
65686 |
aatatactttatatagtcattctacgataactaatataaccaattagcaaataattatgacta |
65748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 31842850 - 31842814
Alignment:
| Q |
198 |
aactaatataaccaattagcaactaattataactaac |
234 |
Q |
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| T |
31842850 |
aactaatataaccaaataacaactaattataactaac |
31842814 |
T |
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